9YGY image
Deposition Date 2025-09-29
Release Date 2025-11-19
Last Version Date 2025-11-19
Entry Detail
PDB ID:
9YGY
Keywords:
RIBOSOME
Title:
Structure of a GRP94 folding intermediate engaged with a CCDC134- and FKBP11-bound secretory translocon
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Method Details:
Experimental Method:
ELECTRON MICROSCOPY
Resolution:
4.10 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
9YGY validation report
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Translocon-associated protein subunit alpha
Gene (Uniprot):SSR1
Chain IDs:A (auth: 5)
Chain Length:286
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P43307 Pfam ID:PF03896
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Translocon-associated protein subunit beta
Gene (Uniprot):SSR2
Chain IDs:B (auth: 6)
Chain Length:183
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P43308 Pfam ID:PF05753
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Translocon-associated protein subunit gamma
Gene (Uniprot):SSR3
Chain IDs:C (auth: 7)
Chain Length:185
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:Q9UNL2 Pfam ID:PF07074
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Translocon-associated protein subunit delta
Gene (Uniprot):SSR4
Chain IDs:D (auth: 8)
Chain Length:173
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P51571 Pfam ID:PF05404
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Peptidyl-prolyl cis-trans isomerase FKBP11
Gene (Uniprot):FKBP11
Chain IDs:E (auth: A)
Chain Length:201
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:Q9NYL4 Pfam ID:PF00254
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Coiled-coil domain-containing protein 134
Gene (Uniprot):CCDC134
Chain IDs:F (auth: B)
Chain Length:229
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:Q9H6E4 Pfam ID:PF15002
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Protein transport protein Sec61 subunit alpha isoform 1
Gene (Uniprot):SEC61A1
Chain IDs:G (auth: D)
Chain Length:476
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P61619 Pfam ID:PF10559, PF00344
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Protein transport protein Sec61 subunit beta
Gene (Uniprot):SEC61B
Chain IDs:H (auth: E)
Chain Length:96
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P60468 Pfam ID:PF03911
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Protein transport protein Sec61 subunit gamma
Gene (Uniprot):SEC61G
Chain IDs:I (auth: F)
Chain Length:68
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P60059 Pfam ID:PF00584
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Stress-associated endoplasmic reticulum protein 1
Gene (Uniprot):SERP1
Chain IDs:J (auth: G)
Chain Length:66
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:Q9Y6X1 Pfam ID:PF06624
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A
Gene (Uniprot):STT3A
Chain IDs:K (auth: I)
Chain Length:705
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P46977 Pfam ID:PF02516, PF22627 EC:2.4.99.18
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Oligosaccharyltransferase complex subunit OSTC
Gene (Uniprot):OSTC
Chain IDs:L (auth: J)
Chain Length:149
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:Q9NRP0 Pfam ID:PF04756 EC:2.4.99.18
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4
Gene (Uniprot):OST4
Chain IDs:M (auth: K2)
Chain Length:37
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P0C6T2 Pfam ID:PF10215 EC:2.4.99.18
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit TMEM258
Gene (Uniprot):TMEM258
Chain IDs:N (auth: L2)
Chain Length:79
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P61165 Pfam ID:PF05251 EC:2.4.99.18
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1
Gene (Uniprot):DAD1
Chain IDs:O (auth: M2)
Chain Length:113
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P61803 Pfam ID:PF02109 EC:2.4.99.18
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit KCP2
Gene (Uniprot):KRTCAP2
Chain IDs:P (auth: N)
Chain Length:136
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:Q8N6L1 Pfam ID:PF09775
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit
Gene (Uniprot):DDOST
Chain IDs:Q (auth: N2)
Chain Length:456
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P39656 Pfam ID:PF03345 EC:2.4.99.18
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1
Gene (Uniprot):RPN1
Chain IDs:R (auth: O2)
Chain Length:607
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P04843 Pfam ID:PF04597 EC:2.4.99.18
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2
Gene (Uniprot):RPN2
Chain IDs:S (auth: P2)
Chain Length:631
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P04844 Pfam ID:PF05817 EC:2.4.99.18
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Endoplasmin
Gene (Uniprot):HSP90B1
Chain IDs:T (auth: y3)
Chain Length:846
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P14625 Pfam ID:PF13589, PF00183
Ligand Molecules
ELU
Primary Citation
Structural basis of regulated N-glycosylation at the secretory translocon
Nature ? ? ? (2025)
DOI: 10.1038/s41586-025-09756-8
Primary Citation of related structures
9YGY
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