9YBQ image
Deposition Date 2025-09-17
Release Date 2025-12-03
Last Version Date 2025-12-03
Entry Detail
PDB ID:
9YBQ
Title:
Vibrio cholerae protein FrhA peptid-binding domain and adjacent split domain (S1127-F1439) in complex with peptide AGYTD X-ray crystallography structure
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.50 Å
R-Value Free:
0.25
R-Value Work:
0.24
R-Value Observed:
0.24
Space Group:
P 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cadherin domain protein
Gene (Uniprot):VC0395_A1227
Chain IDs:A, B, C (auth: E), D (auth: G), E (auth: I), F (auth: K)
Chain Length:363
Number of Molecules:6
Biological Source:Vibrio cholerae O395
Polymer Type:polypeptide(L)
Molecule:ALA-GLY-TYR-THR-ASP
Chain IDs:G (auth: M), H (auth: N), I (auth: O), J (auth: P), K (auth: Q), L (auth: R)
Chain Length:5
Number of Molecules:6
Biological Source:Vibrio cholerae
Ligand Molecules
Primary Citation
Peptide-based ligand antagonists block a Vibrio cholerae adhesin.
Febs Lett. ? ? ? (2025)
PMID: 41262002 DOI: 10.1002/1873-3468.70231

Abstact

Vibrio cholerae, the causative agent of cholera, uses surface proteins such as the repeats-in-toxin (RTX) adhesin FrhA to colonize hosts and initiate infection. Blocking bacterial adhesion represents a promising therapeutic strategy to treat infections without promoting drug resistance. FrhA contains a peptide-binding domain (PBD) that is key for hemagglutination, human epithelial cell binding, and V. cholerae biofilm formation. Previous studies identified a lead pentapeptide ligand with the sequence Ala-Gly-Tyr-Thr-Asp (AGYTD) that blocks V. cholerae colonization of the mouse small intestine at high micromolar concentrations. In this study, a structure-guided approach identified a minimal D-amino acid-containing tripeptide motif with higher affinity for the FrhA-PBD and predicted metabolic stability. Our results contribute to the development of anti-adhesion strategies to combat infections. Impact statement Our study elucidates the molecular basis of peptide recognition by the Vibrio cholerae adhesin FrhA and develops minimal D-amino-acid peptides that block adhesion with nanomolar affinity. These findings advance understanding of RTX adhesins and provide a structural blueprint for next-generation anti-adhesion therapeutics against cholera and related infections.

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Chemical

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Primary Citation of related structures
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