ISDA: 9YA1

Deposition Date 2025-09-15

Release Date 2025-12-03

Last Version Date 2025-12-17

Entry Detail

PDB ID:

9YA1

Keywords:

STRUCTURAL PROTEIN

Title:

Cryo-EM structure of intraconoidal microtubule 2 (ICMT2) from Toxoplasma gondii (8-nm repeat)

Biological Source:

Source Organism:

Toxoplasma gondii (Taxon ID: 5811)

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

3.52 Å

Aggregation State:

FILAMENT

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:ICMAP4, TGME49_225340
Gene (Uniprot):TGDOM2_225340
Chain IDs:A (auth: 1), B (auth: 2)
Chain Length:2041
Number of Molecules:2
Biological Source:Toxoplasma gondii

UniProt ID:A0A086KM91

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Microtubule associated protein SPM1
Gene (Uniprot):TGRH88_067480
Chain IDs:C (auth: A), N (auth: B), Y (auth: C), JA (auth: D), UA (auth: E), FB (auth: F), IB (auth: G), JB (auth: H), KB (auth: I), LB (auth: J), MB (auth: K)
Chain Length:351
Number of Molecules:11
Biological Source:Toxoplasma gondii

UniProt ID:A0A7J6K285

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Tubulin alpha chain
Chain IDs:D (auth: A0), F (auth: A2), H (auth: A4), J (auth: A6), L (auth: A8), O (auth: B0), Q (auth: B2), S (auth: B4), U (auth: B6), W (auth: B8), Z (auth: C0), BA (auth: C2), DA (auth: C4), FA (auth: C6), HA (auth: C8), KA (auth: D0), MA (auth: D2), OA (auth: D4), QA (auth: D6), SA (auth: D8), VA (auth: E0), XA (auth: E2), ZA (auth: E4), BB (auth: E6), DB (auth: E8), GB (auth: F0)
Chain Length:453
Number of Molecules:26
Biological Source:Toxoplasma gondii

UniProt ID:P10873 Pfam ID:PF00091, PF03953

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Tubulin beta chain
Gene (Uniprot):BTUB
Chain IDs:E (auth: A1), G (auth: A3), I (auth: A5), K (auth: A7), M (auth: A9), P (auth: B1), R (auth: B3), T (auth: B5), V (auth: B7), X (auth: B9), AA (auth: C1), CA (auth: C3), EA (auth: C5), GA (auth: C7), IA (auth: C9), LA (auth: D1), NA (auth: D3), PA (auth: D5), RA (auth: D7), TA (auth: D9), WA (auth: E1), YA (auth: E3), AB (auth: E5), CB (auth: E7), EB (auth: E9), HB (auth: F1)
Chain Length:449
Number of Molecules:26
Biological Source:Toxoplasma gondii

UniProt ID:I7BFC9 Pfam ID:PF00091, PF03953

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:TLAP3 (apical cap protein AC5), TGME49_235380
Gene (Uniprot):TGPRC2_235380
Chain IDs:NB (auth: O), OB (auth: P), PB (auth: R)
Chain Length:220
Number of Molecules:3
Biological Source:Toxoplasma gondii

UniProt ID:A0A151H4L4

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:TLAP4 (thioredoxin-like associated protein), TGME49_201760
Gene (Uniprot):TGRH88_037200
Chain IDs:QB (auth: U), RB (auth: V), SB (auth: W), TB (auth: X)
Chain Length:220
Number of Molecules:4
Biological Source:Toxoplasma gondii

UniProt ID:A0A7J6K913

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:TRXL1, TGME49_232410
Gene (Uniprot):p25
Chain IDs:UB (auth: a), VB (auth: b), WB (auth: c), XB (auth: d), YB (auth: e), ZB (auth: f), AC (auth: g), BC (auth: h), CC (auth: i), DC (auth: j), GC (auth: m), HC (auth: n), IC (auth: o), JC (auth: p), KC (auth: q), LC (auth: r), MC (auth: s), NC (auth: t), OC (auth: u), PC (auth: v), QC (auth: w), RC (auth: x)
Chain Length:351
Number of Molecules:22
Biological Source:Toxoplasma gondii

UniProt ID:Q8MPF4 Pfam ID:PF13905

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:TRXL2, TGME49_225790
Gene (Uniprot):TGRH88_045420
Chain IDs:EC (auth: k), FC (auth: l)
Chain Length:189
Number of Molecules:2
Biological Source:Toxoplasma gondii

UniProt ID:A0A7J6K232 Pfam ID:PF13905

Ligand Molecules