ISDA: 9Y5Y

Deposition Date 2025-09-05

Release Date 2025-11-12

Last Version Date 2025-11-12

Entry Detail

PDB ID:

9Y5Y

Keywords:

ANTIVIRAL PROTEIN/VIRAL PROTEIN

Title:

Structure of the Omicron Spike RBD bound by the monobody s19382 (local refinement from dimerized Spike protein ECDs)

Biological Source:

Source Organism:

Severe acute respiratory syndrome coronavirus 2 (Taxon ID: 2697049)
synthetic construct (Taxon ID: 32630)

Host Organism:

Homo sapiens

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

3.16 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

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Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Spike protein S1
Gene (Uniprot):S
Chain IDs:A, C, E, G
Chain Length:195
Number of Molecules:4
Biological Source:Severe acute respiratory syndrome coronavirus 2

UniProt ID:P0DTC2 Pfam ID:PF09408

Polymer Type:polypeptide(L)
Molecule:Monobody s19382
Chain IDs:B, D, F, H, I, J, K, L
Chain Length:89
Number of Molecules:8
Biological Source:synthetic construct

Ligand Molecules

Primary Citation

ADAPT-M: A workflow for rapid, quantitative in vitro measurements of enriched protein libraries

Perez, C.P, DelRosso, N.V, Noland, C.L, Carter, J, Choe, C.A, Parekh, U, Wen, Q, Barnes, C.O, Handa, M, Fordyce, P.M, Huang, P.S.Show

To Be Published ? ? ? (?)

Primary Citation of related structures

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