9X1H image
Deposition Date 2025-10-02
Release Date 2025-11-19
Last Version Date 2025-11-19
Entry Detail
PDB ID:
9X1H
Keywords:
Title:
Cryo-EM Structure of human complement C1s CUB domain in complex with RAY121
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.60 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Complement C1s subcomponent heavy chain
Gene (Uniprot):C1S
Chain IDs:D (auth: B), F (auth: A)
Chain Length:290
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:RAY121 Fab Heavy chain
Chain IDs:C (auth: I), E (auth: H)
Chain Length:225
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:RAY121 Fab Light chain
Chain IDs:A (auth: L), B (auth: M)
Chain Length:220
Number of Molecules:2
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Long lasting complement neutralisation by RAY121, an engineered anti-C1s antibody with C1q displacement function.
Ebiomedicine 122 106009 106009 (2025)
PMID: 41205294 DOI: 10.1016/j.ebiom.2025.106009

Abstact

BACKGROUND Antibody drugs blocking the complement classical pathway (CP) often require frequent intravenous administration to overcome the high abundance or rapid turnover of complement proteins. This makes treatment compliance burdensome for patients. METHODS Screening was performed to identify anti-C1s antibodies specific for the CUB domain of C1s with CP neutralising function. Antibody engineering was performed on the anti-C1s antibody to prolong its half-life in circulation. The variable region was mutated to confer pH-dependent binding to C1s, and the antibody Fc was modified to lower its isoelectric point and to have enhanced binding to the neonatal Fc receptor. FINDINGS A combination of pH-dependent binding to C1s and optimisation of charge characteristics was required for the final engineered antibody, RAY121, to achieve a long half-life in circulation and long-lasting neutralisation of the CP. In male cynomolgus monkeys, a single subcutaneous injection suppressed CP activity for more than a month. RAY121 neutralises the CP by using a unique mechanism of displacing C1q from the C1 complex and blocking its reassembly. Structure analysis by cryo-electron microscopy revealed that the RAY121 epitope on C1s is distinct from the C1q binding site, and that C1q displacement is mediated by the Fab arm sterically obstructing C1q binding to C1s. INTERPRETATION RAY121 is able to neutralise the CP for an extended duration and is effective at doses that can be administered subcutaneously for convenient treatment. These data present RAY121 as a promising agent for the treatment of CP-driven autoimmune disorders. FUNDING Chugai Pharmaceutical Co. Ltd.

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Disease

Primary Citation of related structures
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