9WJW image
Deposition Date 2025-08-31
Release Date 2025-11-12
Last Version Date 2026-01-28
Entry Detail
PDB ID:
9WJW
Title:
Cryo-EM structure of the GarQ-lmYZ complex
Biological Source:
Source Organism(s):
Method Details:
Experimental Method:
Resolution:
2.96 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Prepeptide GarQ
Gene (Uniprot):garQ
Chain IDs:E (auth: A)
Chain Length:50
Number of Molecules:1
Biological Source:Lactococcus garvieae
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Mannose/fructose/sorbose family PTS transporter subunit IIC
Gene (Uniprot):sorA
Chain IDs:A (auth: F), C (auth: S), F (auth: Y)
Chain Length:268
Number of Molecules:3
Biological Source:Listeria monocytogenes
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:PTS mannose family transporter subunit IID
Gene (Uniprot):E5H26_12035, FZW82_08485, GIH49_05195, IP987_000531
Chain IDs:B (auth: G), D (auth: T), G (auth: Z)
Chain Length:303
Number of Molecules:3
Biological Source:Listeria monocytogenes
Ligand Molecules
Primary Citation
Structural basis for the extended-spectrum antimicrobial activity of Garvieacin Q.
Appl.Environ.Microbiol. ? e0177325 e0177325 (2026)
PMID: 41562606 DOI: 10.1128/aem.01773-25

Abstact

Class IIa and IId bacteriocins are antimicrobial peptides with potential for combating antibiotic-resistant pathogens. However, their species-specific activity, dictated by recognition of the mannose phosphotransferase system (Man-PTS) receptor, often restricts their spectrum. Garvieacin Q/Garvicin Q (GarQ), a newly identified class IId bacteriocin, is unusual in that it targets both Lactococcus garvieae and the non-lactococcal pathogen Listeria monocytogenes, yet the structural basis for this cross-species activity has remained unclear. Using cryo-electron microscopy, we determined the structures of GarQ bound to Man-PTS receptors from Lactococcus garvieae and Listeria monocytogenes. In Lactococcus garvieae, the receptor contains a unique Tudor-like γ+ domain that sterically constrains the N terminus of incoming bacteriocins, thereby enforcing specificity for GarQ while excluding others such as lactococcin A (LcnA). In Listeria monocytogenes, GarQ engages the receptor through the same conserved binding mode, effectively bypassing the unusual species barrier. We further demonstrate that the C-terminal length of GarQ is a critical determinant of pore size and target specificity. Together, these findings uncover the structural mechanism underlying GarQ's atypical extended-spectrum activity and provide a framework for engineering bacteriocins with customized spectra to combat specific pathogens.IMPORTANCEThis study establishes a structural basis for how the extended-spectrum bacteriocin Garvieacin Q (GarQ) circumvents the canonical species-specificity of class II bacteriocins by engaging mannose phosphotransferase system receptors from different bacterial genera through both conserved and divergent binding modes. We identify a previously unknown Tudor-like γ+ domain in the Lactococcus garvieae receptor that sterically restricts the access of other bacteriocins, thereby defining bacteriocin specificity. Moreover, we demonstrate that the C-terminal length of GarQ critically determines pore size and bacterial targets, revealing an engineerable principle for designing synthetic bacteriocins with customized spectra against clinically relevant pathogens.

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Primary Citation of related structures
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