ISDA: 9W2M

Deposition Date 2025-07-28

Release Date 2026-02-25

Last Version Date 2026-02-25

Entry Detail

PDB ID:

9W2M

Keywords:

STRUCTURAL PROTEIN

Title:

Cryo-EM structure of the Cytoplasmic lattice(CPL) from mouse oocyte

Biological Source:

Source Organism(s):

Mus musculus (Taxon ID: 10090)

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

4.20 Å

Aggregation State:

FILAMENT

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Polymer Type:polypeptide(L)
Molecule:Inactive protein-arginine deiminase type-6
Chain IDs:A (auth: 1), L (auth: Z), W (auth: z), X (auth: 2), Y (auth: 3), Z (auth: 4), AA (auth: 5), BA (auth: 6), CA (auth: 7), DA (auth: 8), EA (auth: 9), FA (auth: 12), WA (auth: 11), XA (auth: 19), YA (auth: 15), ZA (auth: 16), AB (auth: 14), BB (auth: 13), CB (auth: 17), DB (auth: 18)
Chain Length:682
Number of Molecules:20
Biological Source:Mus musculus

Polymer Type:polypeptide(L)
Molecule:Isoform 4 of NACHT, LRR and PYD domains-containing protein 5
Chain IDs:KA (auth: A), MA (auth: F), SA (auth: a), UA (auth: f)
Chain Length:963
Number of Molecules:4
Biological Source:Mus musculus

Polymer Type:polypeptide(L)
Molecule:Transducin-like enhancer protein 6
Chain IDs:LA (auth: B), NA (auth: G), TA (auth: b), VA (auth: g)
Chain Length:436
Number of Molecules:4
Biological Source:Mus musculus

Polymer Type:polypeptide(L)
Molecule:Oocyte-expressed protein homolog
Chain IDs:B (auth: C), E (auth: H), M (auth: c), P (auth: h)
Chain Length:125
Number of Molecules:4
Biological Source:Mus musculus

Polymer Type:polypeptide(L)
Molecule:KH domain-containing protein 3
Chain IDs:C (auth: D), N (auth: d)
Chain Length:128
Number of Molecules:2
Biological Source:Mus musculus

Polymer Type:polypeptide(L)
Molecule:NLR family, pyrin domain containing 4F
Chain IDs:D (auth: E), F (auth: I), O (auth: e), Q (auth: i)
Chain Length:933
Number of Molecules:4
Biological Source:Mus musculus

Polymer Type:polypeptide(L)
Molecule:FBXW24
Chain IDs:G (auth: J), R (auth: j)
Chain Length:466
Number of Molecules:2
Biological Source:Mus musculus

Polymer Type:polypeptide(L)
Molecule:S-phase kinase-associated protein 1
Chain IDs:H (auth: K), S (auth: k)
Chain Length:163
Number of Molecules:2
Biological Source:Mus musculus

Polymer Type:polypeptide(L)
Molecule:Tubulin beta-2A chain
Chain IDs:IA (auth: L), QA (auth: l)
Chain Length:445
Number of Molecules:2
Biological Source:Mus musculus

Polymer Type:polypeptide(L)
Molecule:Tubulin beta-2B chain
Chain IDs:JA (auth: M), RA (auth: m)
Chain Length:445
Number of Molecules:2
Biological Source:Mus musculus

Polymer Type:polypeptide(L)
Molecule:NACHT, LRR and PYD domains-containing protein 14
Chain IDs:GA (auth: N), OA (auth: n)
Chain Length:966
Number of Molecules:2
Biological Source:Mus musculus

Polymer Type:polypeptide(L)
Molecule:Ubiquitin-conjugating enzyme E2 D3
Chain IDs:I (auth: O), T (auth: o)
Chain Length:147
Number of Molecules:2
Biological Source:Mus musculus

Polymer Type:polypeptide(L)
Molecule:E3 ubiquitin-protein ligase UHRF1
Chain IDs:J (auth: Q), U (auth: q), HA (auth: P), PA (auth: p)
Chain Length:782
Number of Molecules:4
Biological Source:Mus musculus

Polymer Type:polypeptide(L)
Molecule:Zinc finger BED domain-containing protein 3
Chain IDs:K (auth: R), V (auth: r)
Chain Length:55
Number of Molecules:2
Biological Source:Mus musculus

Ligand Molecules