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9VX1 image
Deposition Date 2025-07-18
Release Date 2026-01-14
Last Version Date 2026-01-14
Entry Detail
PDB ID:
9VX1
Keywords:
CELL INVASION
Title:
The cryo-EM structure of gRNA-bound SPARDA complex
Biological Source:
Source Organism(s):
Novosphingopyxis baekryungensis (Taxon ID: 279369)
Expression System(s):
Bacteria latreille et al. 1825, Novosphingopyxis baekryungensis
Method Details:
Experimental Method:
ELECTRON MICROSCOPY
Resolution:
2.77 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
9VX1 validation report
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:pAgo
Chain IDs:A, D
Chain Length:485
Number of Molecules:2
Biological Source:Novosphingopyxis baekryungensis
Polymer Type:polypeptide(L)
Molecule:DREN-APAZ
Chain IDs:B, E
Chain Length:442
Number of Molecules:2
Biological Source:Novosphingopyxis baekryungensis
Polymer Type:polyribonucleotide
Molecule:RNA (5'-R(P*AP*UP*AP*CP*UP*GP*CP*AP*CP*AP*GP*CP*UP*GP*AP*CP*GP*AP*UP*A)-3')
Chain IDs:C (auth: Z), F (auth: a)
Chain Length:485
Number of Molecules:2
Biological Source:Novosphingopyxis baekryungensis
Ligand Molecules
MG
Primary Citation
Filament assembly induced by the recognition of target DNA activates the prokaryotic Argonaute SPARDA system
Nat Commun ? ? ? (2026)
DOI: 10.1038/s41467-025-68195-1
Primary Citation of related structures
9VX1
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