9VSR image
Deposition Date 2025-07-09
Release Date 2025-09-17
Last Version Date 2025-11-19
Entry Detail
PDB ID:
9VSR
Title:
The DCY1040 and TUG-891-bound structure of TMEM175
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Method Details:
Experimental Method:
Resolution:
2.92 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Endosomal/lysosomal proton channel TMEM175
Gene (Uniprot):TMEM175
Chain IDs:A, B
Chain Length:504
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation
Structural insights into the activation of TMEM175 by small molecule.
Neuron 113 3567 ? (2025)
PMID: 40865534 DOI: 10.1016/j.neuron.2025.07.029

Abstact

The upregulation of transmembrane protein 175 (TMEM175) has the potential to improve Parkinson's disease (PD) by aiding in the removal of α-synuclein aggregates. Understanding the structural basis of TMEM175 agonisms is crucial for uncovering its therapeutic potential for PD. Here, we have identified the first cryo-electron microscopy (cryo-EM) structure of human TMEM175 complexes with three agonists: DCY1020, DCY1040, and TUG-891. An open state of TMEM175 is unequivocally captured, laying the groundwork for designing more effective agonists. Further investigations using surface plasmon resonance, systematic mutagenesis, whole-endolysosome patch-clamp techniques, and molecular dynamics simulations consistently revealed that DCY1020/1040 binds at the interface between two subunits, inducing an open conformation further augmented by the synergistic agonist TUG-891. Notably, these agonists facilitate the removal of pathological α-synuclein and restore functions of PD-related TMEM175 variants in neurons. Our findings provide proof of concept that drug discovery targeting TMEM175 can develop agonists capable of effectively reducing pathological α-synuclein levels in PD.

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Primary Citation of related structures
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