9VRS image
Deposition Date 2025-07-07
Release Date 2025-12-17
Last Version Date 2025-12-17
Entry Detail
PDB ID:
9VRS
Keywords:
Title:
Crystal structure of human PTPN2 with inhibitor WS19
Biological Source:
Source Organism(s):
Homo sapiens (Taxon ID: 9606)
Expression System(s):
Method Details:
Experimental Method:
Resolution:
2.00 Å
R-Value Free:
0.21
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Tyrosine-protein phosphatase non-receptor type 2
Gene (Uniprot):PTPN2
Chain IDs:A (auth: B), B (auth: A)
Chain Length:301
Number of Molecules:2
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Development of Novel PTPN2/1 Inhibitors for the Treatment of Melanoma.
J.Med.Chem. 68 21917 21938 (2025)
PMID: 41047545 DOI: 10.1021/acs.jmedchem.5c02300

Abstact

The global incidence of melanoma has risen substantially over the past two decades, driving an urgent need for novel therapeutic strategies. The nonreceptor protein tyrosine phosphatases PTPN2/PTPN1 have emerged as promising therapeutic targets, yet developing effective inhibitors faces significant drug-like property challenges. Through rational drug design, we discovered WS35─a potent dual PTPN2/1 inhibitor exhibiting exceptional enzymatic activity (PTPN2 IC50 = 5.8 nM, PTPN1 IC50 = 12.8 nM), favorable safety profiles, and enhanced oral bioavailability (F = 7.1%). Mechanistic studies demonstrate that WS35 modulates the IFNγ-JAK-STAT signaling axis, significantly augmenting CD8+ T-cell tumor infiltration. In B16-OVA syngeneic models, WS35 monotherapy and its combination with an anti-PD-1 antibody achieved robust tumor growth suppression, outperforming AC484, with no observable systemic toxicity. Collectively, WS35 represents a preclinical candidate with validated efficacy and safety for developing novel antimelanoma therapeutics.

Legend

Protein

Chemical

Disease

Primary Citation of related structures
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