ISDA: 9VNZ

Deposition Date 2025-07-01

Release Date 2026-01-28

Last Version Date 2026-01-28

Entry Detail

PDB ID:

9VNZ

Keywords:

SIGNALING PROTEIN

Title:

Cryo-EM structure of Gi coupled Sphingosine 1-phosphate receptor bound with HY-X-1011

Biological Source:

Source Organism(s):

Homo sapiens (Taxon ID: 9606)
Mus musculus (Taxon ID: 10090)
Escherichia coli (Taxon ID: 562)

Expression System(s):

Spodoptera frugiperda, Trichoplusia ni

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

2.79 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

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Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1
Gene (Uniprot):GNB1
Chain IDs:A
Chain Length:357
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:P62873 Pfam ID:PF25391

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2
Gene (Uniprot):GNG2
Chain IDs:B (auth: C)
Chain Length:71
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:P59768 Pfam ID:PF00631

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Guanine nucleotide-binding protein G(i) subunit alpha-1
Gene (Uniprot):GNAI1
Chain IDs:C (auth: D)
Chain Length:354
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:P63096 Pfam ID:PF00503

Polymer Type:polypeptide(L)
Molecule:scFv16
Chain IDs:D (auth: E)
Chain Length:251
Number of Molecules:1
Biological Source:Mus musculus

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Soluble cytochrome b562,Sphingosine 1-phosphate receptor 1
Gene (Uniprot):cybC, S1PR1
Chain IDs:E (auth: F)
Chain Length:534
Number of Molecules:1
Biological Source:Escherichia coli, Homo sapiens

UniProt ID:P0ABE7,P21453 Pfam ID:PF00001

Ligand Molecules

A1ESY

Primary Citation

Cryo-EM structure of Gi coupled Sphingosine 1-phosphate receptor bound with HY-X-1011

Yu, L.Y, Jiao, H.Z, Ti, R.J, Pang, B, Gan, B, Ren, R.B.Show

To Be Published ? ? ? (?)

Primary Citation of related structures

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