9VNO image
Deposition Date 2025-06-30
Release Date 2026-02-04
Last Version Date 2026-02-04
Entry Detail
PDB ID:
9VNO
Keywords:
GENE REGULATION
Title:
The crystal structure of the Ehd3 tandem PHD-H3K4me1 complex.
Biological Source:
Source Organism(s):
Oryza sativa subsp. japonica (Taxon ID: 39947)
Expression System(s):
Escherichia coli, Oryza sativa
Method Details:
Experimental Method:
X-RAY DIFFRACTION
Resolution:
1.50 Å
R-Value Free:
0.17
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
I 41
9VNO validation report
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:PHD finger protein EHD3
Gene (Uniprot):EHD3
Chain IDs:A
Chain Length:131
Number of Molecules:1
Biological Source:Oryza sativa subsp. japonica
UniProt ID:Q6ZJM9 Pfam ID:PF00628
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Histone H3.2
Gene (Uniprot):OsJ_004096, P0505D12.33, OsJ_014206, OSJNBb0108J11.17, OSJNBb0042J17.11, H3R-11, P0681F10.3, P0702F05.38, P0681F10.4, P0702F05.39, H3R-21
Chain IDs:B
Chain Length:12
Number of Molecules:1
Biological Source:Oryza sativa subsp. japonica
UniProt ID:Q2RAD9
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
MLZ B LYS modified residue
Ligand Molecules
ZN
Primary Citation
H3K4me1 directs H3K36me2 and H3K36me3 deposition in land plants
To Be Published ? ? ? (?)
Primary Citation of related structures
9VNO
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