9VNK image
Deposition Date 2025-06-30
Release Date 2025-12-31
Last Version Date 2026-01-28
Entry Detail
PDB ID:
9VNK
Keywords:
Title:
Cryo-EM structure of hnRAC1-2,8beta fibril polymorph2
Biological Source:
Source Organism(s):
Homo sapiens (Taxon ID: 9606)
Method Details:
Experimental Method:
Resolution:
3.38 Å
Aggregation State:
FILAMENT
Reconstruction Method:
HELICAL
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:GLY-SFE-GLY-GLY-ASN-ASP-ASN-SFE-GLY
Chain IDs:A, B (auth: D), C (auth: H), D (auth: I), E (auth: L), F (auth: O), G (auth: Q), H (auth: B), I (auth: G), J (auth: C), K (auth: F), L (auth: K), M, N, O (auth: P), P (auth: R), Q (auth: E), R (auth: J), S, T (auth: Y), U (auth: g), V (auth: i), W (auth: o), X (auth: u), Y (auth: y), Z (auth: U), AA (auth: e), BA (auth: W), CA (auth: c), DA (auth: m), EA (auth: q), FA (auth: s), GA (auth: w), HA (auth: 0), IA (auth: a), JA (auth: k), KA (auth: T), LA (auth: Z), MA (auth: h), NA (auth: j), OA (auth: p), PA (auth: v), QA (auth: z), RA (auth: V), SA (auth: f), TA (auth: X), UA (auth: d), VA (auth: n), WA (auth: r), XA (auth: t), YA (auth: x), ZA (auth: 1), AB (auth: b), BB (auth: l)
Chain Length:9
Number of Molecules:54
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Conformational Adaptability and Thermostability in alpha / beta-Peptide Fibrils Induced by beta-Amino Acid Substitution.
Nano Lett. 26 365 375 (2026)
PMID: 41420871 DOI: 10.1021/acs.nanolett.5c05223

Abstact

The self-assembly of peptides into amyloid fibrils enables the design of functional biomaterials, yet the conformational constraints of α-peptides limit the attainable supramolecular diversity. Here, we introduce β-amino acids, β-phenylalanine (β-Phe), and β-homophenylalanine (β-hPhe) into the reversible fibril-forming core sequence hnRAC1 to generate α/β-peptide variants with distinct architectures and enhanced thermal stability. Cryo-EM reveals that β-modified peptides assemble into polymorphic fibrils with cross-β structures that differ markedly from each other and from native hnRAC1. Comparative structural analysis indicates that backbone extension by β-residues increases subunit conformational heterogeneity, enabling tighter packing and formation of more thermostable fibrils. Examination of intra- and intermolecular contacts shows that enhanced π-π stacking, hydrophobic interactions, hydrogen bonds, and electrostatic interactions likely contribute to fibril stabilization. These results show that minimal backbone modifications can remodel amyloid architecture, offering a generalizable strategy for designing structurally diverse and robust peptide-based biomaterials.

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Primary Citation of related structures
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