9VLI image
Deposition Date 2025-06-25
Release Date 2025-09-24
Last Version Date 2025-10-08
Entry Detail
PDB ID:
9VLI
Keywords:
Title:
Crystal structure of Bacillus subtilis DegQ S25L mutant
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.60 Å
R-Value Free:
0.25
R-Value Work:
0.21
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Degradation enzyme regulation protein DegQ
Gene (Uniprot):degQ
Mutagens:S25L
Chain IDs:A (auth: J), B (auth: K), C (auth: L), D (auth: M)
Chain Length:46
Number of Molecules:4
Biological Source:Bacillus subtilis
Primary Citation
Tetrameric structure of Bacillus subtilis DegQ and its predicted interaction with the DegS-DegU two-component system.
Acta Crystallogr.,Sect.F 81 425 433 (2025)
PMID: 40937771 DOI: 10.1107/S2053230X25007903

Abstact

Bacillus subtilis DegQ is a 46-amino-acid regulatory protein involved in the DegS-DegU two-component system. DegQ promotes the phosphorylation of DegU by DegS, switching the function of DegU from competence to the induction of poly-γ-glutamate production. To elucidate its structural role, we determined the crystal structures of wild-type DegQ and its mutant DegQS25L. Each DegQ monomer folds into a single α-helix, and four monomers assemble into a tetramer characterized by a four-helix coiled-coil structure. Within the tetramer, two adjacent helices are oriented in the same direction, while the other two are oriented oppositely, forming a pseudo-twofold symmetric arrangement. The mutant form displays disrupted symmetry due to altered helix packing, which is caused by shifts in the coiled-coil heptad register induced by the mutation. Structural predictions using AlphaFold3 suggest that DegQ likely binds to the N-terminal helix bundle of DegS, either as a dimer or as individual monomers. These findings provide structural insight into DegQ oligomerization and its potential role in modulating DegS autophosphorylation and DegU binding.

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