ISDA: 9VAK

Deposition Date 2025-06-03

Release Date 2025-08-13

Last Version Date 2025-08-13

Entry Detail

PDB ID:

9VAK

Keywords:

SUGAR BINDING PROTEIN

Title:

Carbohydrate-binding module 32 of LnbB from Bifidobacterium bifidum, LNB complex

Biological Source:

Source Organism:

Bifidobacterium bifidum JCM 1254 (Taxon ID: 398514)

Host Organism:

Escherichia coli BL21(DE3)

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

2.00 Å

R-Value Free:

0.22

R-Value Work:

0.19

R-Value Observed:

0.19

Space Group:

P 2 21 21

Download Validation Report

Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Lacto-N-biosidase
Gene (Uniprot):lnbB
Chain IDs:A, B, C, D
Chain Length:183
Number of Molecules:4
Biological Source:Bifidobacterium bifidum JCM 1254

UniProt ID:B3TLD6 Pfam ID:PF00754 EC:3.2.1.140

Ligand Molecules

Primary Citation

Structural insights into lacto-N-biose I recognition by a family 32 carbohydrate-binding module from Bifidobacterium bifidum

Zhang, X, Sunagawa, N, Kashima, T, Igarashi, K, Miyanaga, A, Fushinobu, S, Ito, T, Katayama, T, Hattie, M, Sakurama, H, Wada, J, Suzuki, R, Ashida, H, Wakagi, T, Yamamoto, K, Stubbs, K.A, Fushinobu, S.Show

To Be Published ? ? ? (?)

Primary Citation of related structures