ISDA: 9V4P

Deposition Date 2025-05-24

Release Date 2025-11-26

Last Version Date 2025-11-26

Entry Detail

PDB ID:

9V4P

Keywords:

GENE REGULATION/DNA

Title:

Cryo-EM structure of A. thaliana MET1(610-1534) bound covalently to a hemi-mCpG DNA

Biological Source:

Source Organism:

Arabidopsis thaliana (Taxon ID: 3702)
synthetic construct (Taxon ID: 32630)

Host Organism:

Escherichia coli

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

2.34 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:DNA (cytosine-5)-methyltransferase 1
Gene (Uniprot):DMT1
Chain IDs:C (auth: A)
Chain Length:926
Number of Molecules:1
Biological Source:Arabidopsis thaliana

UniProt ID:P34881 Pfam ID:PF01426, PF00145

Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(*TP*AP*A*TP*GP*AP*CP*AP*TP*AP*(5CM)P*GP*AP*TP*CP*CP*AP*AP*TP*C)-3')
Chain IDs:A (auth: B)
Chain Length:20
Number of Molecules:1
Biological Source:synthetic construct

Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(*GP*AP*TP*TP*GP*GP*AP*TP*(C49)P*GP*TP*AP*TP*GP*TP*CP*AP*TP*TP*A)-3')
Chain IDs:B (auth: C)
Chain Length:20
Number of Molecules:1
Biological Source:synthetic construct

Ligand Molecules