9UZT image
Deposition Date 2025-05-16
Release Date 2025-12-17
Last Version Date 2025-12-17
Entry Detail
PDB ID:
9UZT
Keywords:
Title:
Crystal structure of human PTPN2 with inhibitor K-38
Biological Source:
Source Organism(s):
Homo sapiens (Taxon ID: 9606)
Expression System(s):
Method Details:
Experimental Method:
Resolution:
2.17 Å
R-Value Free:
0.21
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 32 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Tyrosine-protein phosphatase non-receptor type 2
Gene (Uniprot):PTPN2
Chain IDs:A (auth: B)
Chain Length:300
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Targeting Protein Tyrosine Phosphatase Nonreceptor Type 2 with a Novel Inhibitor for the Treatment of Melanoma.
J.Med.Chem. 68 24649 24671 (2025)
PMID: 41204903 DOI: 10.1021/acs.jmedchem.5c02622

Abstact

Melanoma is a highly aggressive skin cancer with strong metastatic potential, posing significant clinical challenges. Currently, melanoma treatment commonly includes chemotherapy and immunotherapy; nevertheless, the treatment modalities have specific limitations. PTPN2 (protein tyrosine phosphatase nonreceptor type 2) has emerged as a promising therapeutic target. Through rational drug design, we identified compound K-38, a potent PTPN2 inhibitor (IC50 = 7.05 nM) with high safety (hERG IC50 > 40 μM) and excellent liver metabolic stability (T1/2 = 408 min). Compound K-38 also showed improved oral bioavailability (F = 10.46%) over AC-484 (F = 1.40%) (Zheng European Journal of Medicinal Chemistry 2024, 270, 116390,). In vivo, compound K-38 significantly suppressed melanoma growth, especially when combined with anti-PD-1 therapy, outperforming AC-484. It enhanced lymphocyte infiltration into tumors and modulated IFN-γ signaling pathways. These findings indicate that compound K-38 is a potent small molecule inhibitor of PTPN2, laying the groundwork for the future development of PTPN2-targeted therapeutics.

Legend

Protein

Chemical

Disease

Primary Citation of related structures
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