9UWD image
Deposition Date 2025-05-12
Release Date 2025-05-28
Last Version Date 2025-06-25
Entry Detail
PDB ID:
9UWD
Title:
Cryo-EM structure of inactive-DP1
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Escherichia coli (Taxon ID: 562)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.41 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Prostaglandin D2 receptor,Soluble cytochrome b562
Gene (Uniprot):cybC, PTGDR
Chain IDs:A
Chain Length:428
Number of Molecules:1
Biological Source:Homo sapiens, Escherichia coli
Ligand Molecules
Primary Citation
Molecular basis for ligand recognition and receptor activation of the prostaglandin D2 receptor DP1.
Proc.Natl.Acad.Sci.USA 122 e2501902122 e2501902122 (2025)
PMID: 40440061 DOI: 10.1073/pnas.2501902122

Abstact

The prostaglandin D2 receptor 1 (DP1), a rhodopsin-like Class A GPCR, orchestrates critical physiological and pathological processes, ranging from sleep regulation to inflammatory responses and cardiovascular function. Despite its therapeutic significance, structural insights into DP1 activation mechanisms have remained elusive. Here, using cryoelectron microscopy (cryo-EM), we determined high-resolution structures of human DP1 in both inactive and active states, with the latter captured in complex with its endogenous agonist PGD2 or the synthetic agonist BW245C, bound to the stimulatory G protein, Gs. Our structures, coupled with functional and mutagenesis studies, unveiled unique structural features of DP1, including an alternative activation mechanism, ligand-selectivity determinants, and G protein coupling characteristics. These molecular insights provide a rational framework for designing selective DP1-targeted therapeutics, both agonists and antagonists, with enhanced specificity and reduced off-target effects, opening broad avenues for treating DP1-associated disorders.

Legend

Protein

Chemical

Disease

Primary Citation of related structures