9UMH image
Deposition Date 2025-04-22
Release Date 2025-07-09
Last Version Date 2025-07-09
Entry Detail
PDB ID:
9UMH
Keywords:
Title:
V-type (V2-type) amyloid fibril (40) of Tottori (D7N) mutant
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Method Details:
Experimental Method:
Resolution:
3.10 Å
Aggregation State:
HELICAL ARRAY
Reconstruction Method:
HELICAL
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Amyloid-beta protein 40
Gene (Uniprot):APP
Chain IDs:A (auth: AL), B (auth: AM), C (auth: AN), D (auth: AO), E (auth: AP), F (auth: AQ), G (auth: AR), H (auth: AS), I (auth: AT), J (auth: AU), K (auth: AV), L (auth: AW), M (auth: AX), N (auth: AY), O (auth: AZ), P (auth: Aa), Q (auth: Ab), R (auth: Ac), S (auth: Ad), T (auth: Ae), U (auth: Af)
Chain Length:40
Number of Molecules:21
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Microgravity-Assisted Exploration of the Conformational Space of Amyloid beta Affected by Tottori-Type Familial Mutation D7N.
Acs Chem Neurosci ? ? ? (2025)
PMID: 40554613 DOI: 10.1021/acschemneuro.5c00217

Abstact

The amyloid β (Aβ) Tottori variant (D7N) exhibits unique aggregation behaviors and altered fibril formation, posing challenges for structural characterization. To overcome this, the microgravity environment on the International Space Station was employed to study Tottori-type Aβ40 fibril formation and structure. Under Earth gravity, Tottori-type Aβ40 primarily formed nonfibrillar aggregates, hindering detailed structural analysis. In contrast, microgravity significantly enhanced fibril formation and minimized amorphous aggregates. Cryo-electron microscopy revealed two structurally distinct fibril types, each comprising different protomer conformations. In both types, the N-terminal segment was disordered and nor resolved in the density maps. The D7N mutation disrupts the protection of the core by the N-terminal segment often observed in wild-type Aβ40 fibrils, enhancing the hydrophobicity-mediated aggregation propensity. However, microgravity suppressed kinetic traps and facilitated high-quality fibril formation suitable for structural studies that can explore the free energy landscape of Aβ fibril formation. These findings demonstrate the utility of microgravity for studying familial Aβ variants and potentially accelerate our understanding of Aβ aggregation mechanisms in Alzheimer's disease.

Legend

Protein

Chemical

Disease

Primary Citation of related structures