9UJD image
Deposition Date 2025-04-17
Release Date 2025-12-31
Last Version Date 2025-12-31
Entry Detail
PDB ID:
9UJD
Keywords:
Title:
Crystal structure of a Transaminase PaTA from Pseudonocardia ammonioxydans in complex with PLP and LLP
Biological Source:
Source Organism(s):
Method Details:
Experimental Method:
Resolution:
2.80 Å
R-Value Free:
0.24
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
I 2 3
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Branched-chain amino acid aminotransferase
Gene (Uniprot):SAMN05216207_10664
Chain IDs:A
Chain Length:348
Number of Molecules:1
Biological Source:Pseudonocardia ammonioxydans
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Branched-chain amino acid aminotransferase
Gene (Uniprot):SAMN05216207_10664
Chain IDs:B, C, D
Chain Length:348
Number of Molecules:3
Biological Source:Pseudonocardia ammonioxydans
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
LLP A LYS modified residue
Ligand Molecules
Primary Citation
Rational engineering of R-selective transaminase from Pseudonocardia ammonioxydans for efficient synthesis of chiral beta-amino aryl ethers.
Bioresour Technol 443 133802 133802 (2025)
PMID: 41407049 DOI: 10.1016/j.biortech.2025.133802

Abstact

R-transaminases show significant promise for the industrial synthesis of chiral amine pharmaceutical intermediates. However, the application is hindered by limited substrate acceptance and poor catalytic efficiency toward bulky substrates. Herein, the R-transaminase from Pseudonocardia ammonioxydans (PaTA) with the high activity towards the mexiletine precursor ketone (1c) was identified, and its crystal structure was resolved (PDB: 9UJD). Substrate specificity analysis revealed that PaTA exhibited obvious substrate preference for aryl-substituted phenoxyacetones (1c-16c). Based on the crystal structure, key sites affecting substrate selectivity were identified, followed by multiple rounds of engineering that yielded a series of variants with enhanced catalytic performance. Ultimately, the gram-scale synthesis of R-1d and 12d was conducted, achieving the space-time yields (STY) of 24 and 32 g/L·h, respectively. This study provides practical biocatalysts for the synthesis of chiral β-amino aryl ethers, along with insights into the relationship between the enzyme-substrate binding pocket and substrate selectivity.

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Disease

Primary Citation of related structures
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