ISDA: 9UHT

Deposition Date 2025-04-14

Release Date 2025-06-11

Last Version Date 2025-06-11

Entry Detail

PDB ID:

9UHT

EMDB ID:

EMD-64175

Keywords:

VIRAL PROTEIN/RNA

Title:

SARS-CoV-2 E-RTC in complex with RNA-nsp9 and GMPPNP

Biological Source:

Source Organism:

Severe acute respiratory syndrome coronavirus 2 (Taxon ID: 2697049)

Host Organism:

Escherichia coli BL21(DE3)

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

2.00 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:RNA-directed RNA polymerase nsp12
Gene (Uniprot):rep
Chain IDs:A
Chain Length:932
Number of Molecules:1
Biological Source:Severe acute respiratory syndrome coronavirus 2

UniProt ID:P0DTD1 Pfam ID:PF06478, PF00680, PF08717, PF08716, PF20632, PF20633, PF20631, PF13087, PF08710 EC:2.7.7.48

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Non-structural protein 8
Gene (Uniprot):rep
Chain IDs:B, D
Chain Length:198
Number of Molecules:2
Biological Source:Severe acute respiratory syndrome coronavirus 2

UniProt ID:P0DTD1 Pfam ID:PF06478, PF00680, PF08717, PF08716, PF20632, PF20633, PF20631, PF13087, PF08710 EC:2.7.7.48

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Non-structural protein 7
Gene (Uniprot):rep
Chain IDs:C
Chain Length:78
Number of Molecules:1
Biological Source:Severe acute respiratory syndrome coronavirus 2

UniProt ID:P0DTD1 Pfam ID:PF06478, PF00680, PF08717, PF08716, PF20632, PF20633, PF20631, PF13087, PF08710 EC:2.7.7.48

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Helicase nsp13
Gene (Uniprot):rep
Chain IDs:E, F
Chain Length:593
Number of Molecules:2
Biological Source:Severe acute respiratory syndrome coronavirus 2

UniProt ID:P0DTD1 Pfam ID:PF06478, PF00680, PF08717, PF08716, PF20632, PF20633, PF20631, PF13087, PF08710 EC:2.7.7.48

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Viral protein genome-linked nsp9
Gene (Uniprot):rep
Chain IDs:G
Chain Length:113
Number of Molecules:1
Biological Source:Severe acute respiratory syndrome coronavirus 2

UniProt ID:P0DTD1 Pfam ID:PF06478, PF00680, PF08717, PF08716, PF20632, PF20633, PF20631, PF13087, PF08710 EC:2.7.7.48

Polymer Type:polyribonucleotide
Molecule:RNA (5'-R(P*AP*UP*UP*A)-3')
Chain IDs:H
Chain Length:4
Number of Molecules:1
Biological Source:Severe acute respiratory syndrome coronavirus 2

Polymer Type:polyribonucleotide
Molecule:PRIMER
Chain IDs:I
Chain Length:25
Number of Molecules:1
Biological Source:Severe acute respiratory syndrome coronavirus 2

Polymer Type:polyribonucleotide
Molecule:TEMPLATE
Chain IDs:J
Chain Length:27
Number of Molecules:1
Biological Source:Severe acute respiratory syndrome coronavirus 2

Ligand Molecules

GNP

Primary Citation

Response to Matter Arising: Substrate selection and transition state support the mechanism for GTP-mediate RNA capping catalyzed by SARS-CoV-2 NiRAN

Huang, Y, Tan, L, Liu, Y, Yan, L, Rao, Z, Lou, Z.Show

To Be Published ? ? ? (?)

Primary Citation of related structures

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