9T05 image
Deposition Date 2025-10-16
Release Date 2025-12-17
Last Version Date 2025-12-24
Entry Detail
PDB ID:
9T05
Keywords:
Title:
X-ray structure of the adduct formed by dirhodium tetraacetate with a C-phycocyanin
Biological Source:
Source Organism(s):
Method Details:
Experimental Method:
Resolution:
2.17 Å
R-Value Free:
0.26
R-Value Work:
0.22
Space Group:
P 2 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:C-phycocyanin alpha subunit
Gene (Uniprot):cpcA
Chain IDs:A (auth: AAA), C (auth: CCC), E (auth: EEE), G (auth: GGG), I (auth: III), K (auth: KKK)
Chain Length:162
Number of Molecules:6
Biological Source:Galdieria phlegrea
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:C-phycocyanin beta chain
Gene (Uniprot):cpcB
Chain IDs:B (auth: BBB), D (auth: DDD), F (auth: FFF), H (auth: HHH), J (auth: JJJ), L (auth: LLL)
Chain Length:173
Number of Molecules:6
Biological Source:Galdieria phlegrea
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
MEN B ASN modified residue
Primary Citation
Coordination of a Dirhodium(II) Center to Methionine and Cysteine Side Chains: Evidence from X-Ray Structure of the Adduct Formed by Dirhodium Tetraacetate with a C-Phycocyanin.
Int J Mol Sci 26 ? ? (2025)
PMID: 41373647 DOI: 10.3390/ijms262311492

Abstact

Upon reaction of dirhodium tetraacetate ([Rh2(μ-O2CCH3)4]) and some [Rh2(μ-O2CCH3)4] derivatives with proteins, dimeric Rh-Rh units (diRh) or monometallic moieties can bind the side chains of His, Cys, Met, Asp, Asn, Arg and Lys, and the C-terminal carboxylate. However, structural data on the interaction between the diRh center and Cys and Met side chains within the protein environment are still missing. Here, we report the X-ray structure of the adduct that [Rh2(μ-O2CCH3)4] forms with C-phycocyanin from Galdiera phlegrea at 2.17 Å resolution. Twelve diRh binding sites were found on the protein structure, two for each (αβ) unit. Dimetallic fragments were observed close to the side chains of Met30 of β-chains and of Cys73 of α-chains. To the best of our knowledge, the results provide the first unambiguous crystallographic observation of the diRh center binding to Met and Cys protein residues. DiRh binding does not alter overall protein structure and stability. This result will help in the design of new dirhodium-based artificial metalloenzymes.

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Primary Citation of related structures
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