9SOB image
Deposition Date 2025-09-12
Release Date 2025-11-05
Last Version Date 2025-11-05
Entry Detail
PDB ID:
9SOB
Keywords:
NUCLEAR PROTEIN
Title:
Structural Model of the Nuclear Pore Complex in Arabidopsis thaliana
Biological Source:
Source Organism:
Arabidopsis thaliana (Taxon ID: 3702)
Method Details:
Experimental Method:
ELECTRON MICROSCOPY
Resolution:
35.00 Å
Aggregation State:
CELL
Reconstruction Method:
SUBTOMOGRAM AVERAGING
9SOB validation report
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Aladin
Gene (Uniprot):AAAS
Chain IDs:UA (auth: 4), WA (auth: 48)
Chain Length:447
Number of Molecules:2
Biological Source:Arabidopsis thaliana
UniProt ID:Q8GWR1 Pfam ID:PF00400
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Nuclear pore complex protein NUP93A
Gene (Uniprot):NUP93A
Chain IDs:FA (auth: A), RB (auth: A48)
Chain Length:763
Number of Molecules:2
Biological Source:Arabidopsis thaliana
UniProt ID:O22224 Pfam ID:PF04097
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Nuclear pore complex protein NUP93A
Gene (Uniprot):NUP93A
Chain IDs:CA (auth: A24), EA (auth: A40), MA (auth: A16), PA (auth: A32)
Chain Length:860
Number of Molecules:4
Biological Source:Arabidopsis thaliana
UniProt ID:O22224 Pfam ID:PF04097
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Nuclear pore complex protein NUP93A
Gene (Uniprot):NUP93A
Chain IDs:LA (auth: A8)
Chain Length:63
Number of Molecules:1
Biological Source:Arabidopsis thaliana
UniProt ID:O22224 Pfam ID:PF04097
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Nucleoporin (DUF3414)
Gene (Uniprot):T9A14.40, T9A14_40
Chain IDs:SA (auth: B), TA (auth: B8)
Chain Length:1965
Number of Molecules:2
Biological Source:Arabidopsis thaliana
UniProt ID:F4JUG3
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Nuclear pore complex protein NUP205
Gene (Uniprot):NUP205
Chain IDs:BA (auth: C16), DA (auth: C24), JA (auth: C), KA (auth: C8), QB (auth: C32)
Chain Length:1838
Number of Molecules:5
Biological Source:Arabidopsis thaliana
UniProt ID:F4KBW6 Pfam ID:PF11894
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Nuclear pore complex protein NUP155
Gene (Uniprot):NUP155
Chain IDs:KB (auth: D), LB (auth: D8), MB (auth: D16), NB (auth: D24), OB (auth: D32), PB (auth: D40)
Chain Length:1464
Number of Molecules:6
Biological Source:Arabidopsis thaliana
UniProt ID:F4HXV6 Pfam ID:PF08801, PF03177
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Nucleoporin protein Ndc1-Nup protein
Gene (Uniprot):T18K17.9, T18K17_9
Chain IDs:VA (auth: E), XA (auth: E8)
Chain Length:519
Number of Molecules:2
Biological Source:Arabidopsis thaliana
UniProt ID:Q8LAF4
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Nuclear pore complex protein NUP35
Gene (Uniprot):NUP35
Chain IDs:NA (auth: F8), OA (auth: F), QA (auth: F24), RA (auth: F16)
Chain Length:28
Number of Molecules:4
Biological Source:Arabidopsis thaliana
UniProt ID:O04326
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Nuclear pore complex protein NUP54
Gene (Uniprot):NUP54
Chain IDs:YA (auth: H), BB (auth: H8), EB (auth: H24), HB (auth: H16)
Chain Length:254
Number of Molecules:4
Biological Source:Arabidopsis thaliana
UniProt ID:Q8GYF7 Pfam ID:PF13874
Polymer Type:polypeptide(L)
Molecule:NUP58
Chain IDs:ZA (auth: I), CB (auth: I8), FB (auth: I24), IB (auth: I16)
Chain Length:237
Number of Molecules:4
Biological Source:Arabidopsis thaliana
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Nuclear pore complex protein NUP62
Gene (Uniprot):NUP62
Chain IDs:IA (auth: J)
Chain Length:185
Number of Molecules:1
Biological Source:Arabidopsis thaliana
UniProt ID:Q8L7F7 Pfam ID:PF05064
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Nuclear pore complex protein NUP62
Gene (Uniprot):NUP62
Chain IDs:AB (auth: J32), DB (auth: J8), GB (auth: J24), JB (auth: J16)
Chain Length:197
Number of Molecules:4
Biological Source:Arabidopsis thaliana
UniProt ID:Q8L7F7 Pfam ID:PF05064
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Nuclear pore complex protein NUP133
Gene (Uniprot):NUP133
Chain IDs:Y (auth: K), Z (auth: K8), AA (auth: K16)
Chain Length:709
Number of Molecules:3
Biological Source:Arabidopsis thaliana
UniProt ID:F4IGA5 Pfam ID:PF03177
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Nuclear pore complex protein NUP107
Gene (Uniprot):NUP107
Chain IDs:V (auth: L), W (auth: L8), X (auth: L16)
Chain Length:977
Number of Molecules:3
Biological Source:Arabidopsis thaliana
UniProt ID:Q8L748 Pfam ID:PF04121
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Nuclear pore complex protein NUP96
Gene (Uniprot):NUP96
Chain IDs:B (auth: M), E (auth: M8), H (auth: M16)
Chain Length:704
Number of Molecules:3
Biological Source:Arabidopsis thaliana
UniProt ID:Q8LLD0 Pfam ID:PF12110
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Protein transport protein SEC13 homolog B
Gene (Uniprot):SEC13B
Chain IDs:C (auth: N), F (auth: N8), I (auth: N16)
Chain Length:302
Number of Molecules:3
Biological Source:Arabidopsis thaliana
UniProt ID:O64740 Pfam ID:PF00400
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Protein SEH1
Gene (Uniprot):SEH1
Chain IDs:N (auth: O), Q (auth: O8), T (auth: O16)
Chain Length:326
Number of Molecules:3
Biological Source:Arabidopsis thaliana
UniProt ID:Q93VR9 Pfam ID:PF00400
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Nuclear pore complex protein NUP85
Gene (Uniprot):NUP85
Chain IDs:M (auth: P), P (auth: P8), S (auth: P16)
Chain Length:716
Number of Molecules:3
Biological Source:Arabidopsis thaliana
UniProt ID:Q8RXH2 Pfam ID:PF07575
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Nuclear pore complex protein NUP43
Gene (Uniprot):NUP43
Chain IDs:O (auth: Q), R (auth: Q8), U (auth: Q16)
Chain Length:361
Number of Molecules:3
Biological Source:Arabidopsis thaliana
UniProt ID:Q24JJ9
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Nuclear pore complex protein NUP160
Gene (Uniprot):NUP160
Chain IDs:A (auth: R), D (auth: R8), G (auth: R16)
Chain Length:1495
Number of Molecules:3
Biological Source:Arabidopsis thaliana
UniProt ID:Q9C811 Pfam ID:PF11715, PF17238
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:E3 ubiquitin-protein ligase HOS1
Gene (Uniprot):HOS1
Chain IDs:J (auth: T), K (auth: T8), L (auth: T16)
Chain Length:684
Number of Molecules:3
Biological Source:Arabidopsis thaliana
UniProt ID:Q84JU6 Pfam ID:PF13934
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Nuclear pore complex protein NUP214
Gene (Uniprot):NUP214
Chain IDs:GA (auth: V)
Chain Length:196
Number of Molecules:1
Biological Source:Arabidopsis thaliana
UniProt ID:F4I1T7
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Nuclear pore complex protein NUP88
Gene (Uniprot):NUP88
Chain IDs:HA (auth: W)
Chain Length:810
Number of Molecules:1
Biological Source:Arabidopsis thaliana
UniProt ID:Q9FFK6 Pfam ID:PF10168
Ligand Molecules
NA
Primary Citation
In situ architecture of the nuclear pore complex of the higher plant Arabidopsis thaliana
Nat.Plants ? ? ? (2025)
DOI: 10.1038/s41477-025-02138-y
Primary Citation of related structures
9SOB