9SNT image
Deposition Date 2025-09-11
Release Date 2026-02-18
Last Version Date 2026-02-18
Entry Detail
PDB ID:
9SNT
Keywords:
Title:
Apo-form of Schistosoma mansoni Cathepsin D1 at 2.2A resolution
Biological Source:
Source Organism(s):
Expression System(s):
Method Details:
Experimental Method:
Resolution:
2.20 Å
R-Value Free:
0.20
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 62
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cathepsin D (A01 family)
Chain IDs:A
Chain Length:428
Number of Molecules:1
Biological Source:Schistosoma mansoni
Primary Citation
Crystal structure of Schistosoma mansoni cathepsin D1 in complex with a nanobody reveals the conformation of the propeptide-bound state.
Acta Crystallogr D Struct Biol 82 140 150 (2026)
PMID: 41603320 DOI: 10.1107/S2059798326000422

Abstact

Schistosoma mansoni cathepsin D1 (SmCD1) has been shown to be an essential enzyme for helminth metabolism due to its role in haemoglobin degradation: a key amino-acid source for the developing parasite. Therefore, the enzyme is a potential target for the development of antischistosomal inhibitors. SmCD1 has significant sequence identity to cathepsin D-like proteases found in other schistosome species and homology to mammalian aspartic proteases. Here, we report the first crystal structures of a helminth cathepsin D, SmCD1, and have identified a single-domain antibody (nanobody) that specifically binds to SmCD1 with nanomolar affinity but does not recognize human cathepsin D. We have mapped the epitope of the nanobody by determining the crystal structure of the enzyme-nanobody complex, revealing the conformation of SmCD1 in the propeptide-bound state.

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Primary Citation of related structures
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