9SI3 image
Deposition Date 2025-08-28
Release Date 2025-10-01
Last Version Date 2025-11-26
Entry Detail
PDB ID:
9SI3
Keywords:
Title:
Chromosomal Passenger Complex in complex with H3T3ph Nucleosome
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Xenopus laevis (Taxon ID: 8355)
synthetic construct (Taxon ID: 32630)
Method Details:
Experimental Method:
Resolution:
2.83 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Histone H3.2
Chain IDs:B (auth: A), F (auth: E)
Chain Length:135
Number of Molecules:2
Biological Source:Xenopus laevis
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Histone H4
Chain IDs:C (auth: B), G (auth: F)
Chain Length:102
Number of Molecules:2
Biological Source:Xenopus laevis
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Histone H2A type 1
Gene (Uniprot):H2AC11, H2AC13, H2AC15, H2AC16, H2AC17
Chain IDs:D (auth: C), H (auth: G)
Chain Length:129
Number of Molecules:2
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Histone H2B type 1-J
Gene (Uniprot):H2BC11
Chain IDs:E (auth: D), I (auth: H)
Chain Length:125
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (147-MER)
Chain IDs:J (auth: I)
Chain Length:147
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (147-MER)
Chain IDs:K (auth: J)
Chain Length:147
Number of Molecules:1
Biological Source:synthetic construct
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Borealin
Gene (Uniprot):CDCA8
Chain IDs:A (auth: L), L (auth: O)
Chain Length:280
Number of Molecules:2
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Baculoviral IAP repeat-containing protein 5
Gene (Uniprot):BIRC5
Chain IDs:M
Chain Length:142
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Inner centromere protein
Gene (Uniprot):INCENP
Chain IDs:N
Chain Length:918
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Nucleosome interaction of the CPC secures centromeric chromatin integrity and chromosome segregation fidelity.
Embo J. 44 6556 6597 (2025)
PMID: 41145915 DOI: 10.1038/s44318-025-00594-y

Abstact

The chromosomal passenger complex (CPC; Borealin-Survivin-INCENP-Aurora B kinase) ensures accurate chromosome segregation by orchestrating sister chromatid cohesion, error correction of kinetochore-microtubule attachments, and spindle assembly checkpoint signaling. Correct spatiotemporal regulation of CPC is critical for its function. Phosphorylations of histone H3 Thr3 and histone H2A Thr120 and modification-independent nucleosome interactions involving Survivin and Borealin contribute to CPC centromere enrichment. However, how various nucleosome binding elements collectively contribute to CPC centromere enrichment at the mechanistic level, and whether CPC has any non-catalytic role at centromere remain open questions. Combining the high-resolution cryo-EM structure of a CPC-bound H3Thr3ph nucleosome with atomic force microscopy and biochemical and cellular assays, we demonstrate that CPC employs multipartite interactions, which facilitate its engagement with nucleosome acidic patch and the DNA entry-exit site. Perturbing the CPC-nucleosome interaction compromises chromatin protection against MNase digestion in vitro, and centromeric chromatin stability and error-free chromosome segregation in cells. Our work suggests a non-catalytic chromatin-stabilizing role of CPC in maintaining centromeric chromatin features critical for kinetochore function.

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Primary Citation of related structures
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