9SGD image
Deposition Date 2025-08-22
Release Date 2026-02-18
Last Version Date 2026-02-18
Entry Detail
PDB ID:
9SGD
Keywords:
Title:
PENICILLIN-BINDING PROTEIN 1B (PBP-1B) IN COMPLEX WITH A MONOBACTAM (26)
Biological Source:
Source Organism(s):
Expression System(s):
Method Details:
Experimental Method:
Resolution:
1.57 Å
R-Value Free:
0.20
R-Value Work:
0.17
Space Group:
C 2 2 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Penicillin-binding protein 1B
Gene (Uniprot):pbp1b
Mutagens:N656G, R686Q, R687Q
Chain IDs:A
Chain Length:494
Number of Molecules:1
Biological Source:Streptococcus pneumoniae
Primary Citation
Structure-Activity Relationship and Crystallographic Study of New Monobactams.
J.Med.Chem. ? ? ? (2026)
PMID: 41632911 DOI: 10.1021/acs.jmedchem.5c02427

Abstact

Monobactams, a subclass of β-lactam antibiotics with a monocyclic scaffold, are uniquely resistant to hydrolysis by metallo-β-lactamases, providing a distinct therapeutic advantage. Here, we report an in silico-based structure-activity relationship (SAR) investigation of aztreonam-related monobactams. A focused library of monobactam derivatives was synthesized and evaluated for inhibition of penicillin-binding proteins (PBPs) and antibacterial activity. Ten compounds, including aztreonam, were crystallized with truncated PBP1b from Streptococcus pneumoniae, used as a model PBP. Potent PBP1b inhibitors were developed, although high enzymatic potency was not always reflected in strong antibacterial activity. Certain derivatives showed activity against Staphylococcus aureus, which is typically resistant to monobactams. 2D similarity search identified potent inhibitors active against Escherichia coli, Klebsiella pneumoniae, and Acinetobacter baumannii. Crystal structures revealed previously unrecognized binding interactions, including a halogen bond with a conserved threonine residue, underscoring the potential of these interactions to support the development of more potent PBP inhibitors.

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Primary Citation of related structures
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