ISDA: 9SDX

Deposition Date 2025-08-15

Release Date 2025-12-24

Last Version Date 2025-12-24

Entry Detail

PDB ID:

9SDX

Keywords:

LIGASE

Title:

Structure of RBR binding E2 variant crosslinked with NEDD8-CUL5-RBX2 bound ARIH2 and Ub

Biological Source:

Source Organism:

Homo sapiens (Taxon ID: 9606)
synthetic construct (Taxon ID: 32630)

Host Organism:

Escherichia coli

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

2.97 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Cullin-5
Gene (Uniprot):CUL5
Chain IDs:E (auth: C)
Chain Length:780
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q93034 Pfam ID:PF00888, PF10557

Polymer Type:polypeptide(L)
Molecule:L3A2-1
Chain IDs:D (auth: G)
Chain Length:157
Number of Molecules:1
Biological Source:synthetic construct

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:E3 ubiquitin-protein ligase ARIH2
Gene (Uniprot):ARIH2
Chain IDs:F (auth: H)
Chain Length:493
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:O95376 Pfam ID:PF00097, PF01485, PF22191, PF19422 EC:2.3.2.31

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:NEDD8
Gene (Uniprot):NEDD8
Chain IDs:A (auth: N)
Chain Length:81
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q15843 Pfam ID:PF00240

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:RING-box protein 2
Gene (Uniprot):RNF7
Chain IDs:B (auth: R)
Chain Length:113
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q9UBF6 Pfam ID:PF12678

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Ubiquitin
Gene (Uniprot):UBC
Chain IDs:C (auth: U)
Chain Length:75
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:P0CG48 Pfam ID:PF00240

Ligand Molecules