ISDA: 9SDW

Deposition Date 2025-08-14

Release Date 2025-12-17

Last Version Date 2025-12-17

Entry Detail

PDB ID:

9SDW

Keywords:

TRANSFERASE

Title:

tRNA (guanine-7-)-methyltransferase (trmD) from Staphylococcus aureus in complex with SAM-competitive compound

Biological Source:

Source Organism:

Staphylococcus aureus (Taxon ID: 1280)

Host Organism:

Escherichia coli

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

2.60 Å

R-Value Free:

0.29

R-Value Work:

0.22

R-Value Observed:

0.23

Space Group:

P 43 3 2

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Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:tRNA (guanine-N(1)-)-methyltransferase
Gene (Uniprot):trmD
Chain IDs:A
Chain Length:263
Number of Molecules:1
Biological Source:Staphylococcus aureus

UniProt ID:Q6G9X3 Pfam ID:PF01746

Ligand Molecules

A1JNG

Primary Citation

Nanoscale Direct-to-Biology Optimization and Structural Insights into Selective S. aureus TrmD Inhibitors.

Hubner, A.F, Weldert, A.C, Marciniak, T, Hof, F, Beck, V.S, Carien, S, Mulartschyk, S.N, Wolf, E, Ziebuhr, W, Barthels, F.Show

J.Med.Chem. ? ? ? (2025)

PMID: 41367353 DOI: 10.1021/acs.jmedchem.5c02323

Primary Citation of related structures

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