9S3L image
Deposition Date 2025-07-24
Release Date 2025-11-19
Last Version Date 2025-11-19
Entry Detail
PDB ID:
9S3L
Keywords:
Title:
ClxA from Clostridium cavendishii (apo)
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.57 Å
R-Value Free:
0.30
R-Value Work:
0.26
R-Value Observed:
0.26
Space Group:
P 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Phenylacetate-CoA ligase
Gene (Uniprot):SAMN02745163_01864
Chain IDs:A, B, C, D
Chain Length:401
Number of Molecules:4
Biological Source:Clostridium cavendishii
Primary Citation
Biocatalytic synthesis of phenyl benzoate esters using the amide ligase ClxA.
Rsc Chem Biol ? ? ? (2025)
PMID: 41098411 DOI: 10.1039/d5cb00205b

Abstact

The synthesis of ester bonds using lipases is one of the most frequently performed reactions in biocatalysis, yet examples of the enzymatic synthesis of phenyl benzoate esters are comparatively rare. In this report we show that the ligase ClxA, from Clostridium cavendishii, initially reported to have roles in amide bond formation in the biosynthesis of benzoxazole antibiotics, is an effective catalyst for the formation of phenyl benzoate esters from acid and phenol substrates using ATP in an aqueous medium. The structure of ClxA in a complex with both AMP and 3,4-aminohydroxybenzoic acid was determined by X-ray crystallography to 2.15 Å resolution and used as a platform to engineer the enzyme to create variants N226L and K140A possessing broader substrate specificity for ester formation, and also the ability to enable the synthesis of native amide product oligomers.

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Primary Citation of related structures
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