ISDA: 9RPO

Deposition Date 2025-06-25

Release Date 2025-12-24

Last Version Date 2025-12-24

Entry Detail

PDB ID:

9RPO

Keywords:

HYDROLASE

Title:

Crystal structure of DNPH1 bound by compound 3

Biological Source:

Source Organism:

Homo sapiens (Taxon ID: 9606)

Host Organism:

Escherichia coli

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

2.02 Å

R-Value Free:

0.27

R-Value Work:

0.24

R-Value Observed:

0.24

Space Group:

P 61 2 2

Download Validation Report

Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:5-hydroxymethyl-dUMP N-hydrolase
Gene (Uniprot):DNPH1
Chain IDs:A, B
Chain Length:152
Number of Molecules:2
Biological Source:Homo sapiens

UniProt ID:O43598 Pfam ID:PF05014

Ligand Molecules

A1JH5

Primary Citation

Discovery and Characterization of Diverse Non-nucleotide Inhibitors of DNPH1 Using an Integrated Hit Finding Strategy

Whitehurst, B.C, Anderson, N.A, Argyrou, A, Astles, P, Barlaam, B, Cadogan, E.B, Carlino, L, Collie, G.W, Edwards, A, Kitching, L, Li, Y, Milbradt, A.G, Nikkila, J, Northall, S, Pahlen, S, Patel, S, Savory, W, Schade, M, Spencer, J.A, Stead, D, Stubbs, C.J, Wang, A, Wang, W.Show

Acs Med.Chem.Lett. ? ? ? (2025)

DOI: 10.1021/acsmedchemlett.5c00651

Primary Citation of related structures

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