ISDA: 9RN2

Deposition Date 2025-06-19

Release Date 2026-02-11

Last Version Date 2026-02-11

Entry Detail

PDB ID:

9RN2

Keywords:

GENE REGULATION

Title:

Structure of BAF in complex with OCT4-SOX2-bound nucleosome - SHL+6 class 2

Biological Source:

Source Organism(s):

Homo sapiens (Taxon ID: 9606)
Aequorea victoria (Taxon ID: 6100)
synthetic construct (Taxon ID: 32630)

Expression System(s):

Escherichia coli, Homo sapiens, Trichoplusia ni, Synthetic construct

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

4.10 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Histone H3.1
Gene (Uniprot):H3C1, H3C2, H3C3, H3C4, H3C6, H3C7, H3C8, H3C10, H3C11, H3C12
Chain IDs:A, E
Chain Length:139
Number of Molecules:2
Biological Source:Homo sapiens

UniProt ID:P68431 Pfam ID:PF00125

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Histone H4
Gene (Uniprot):H4C1, H4C2, H4C3, H4C4, H4C5, H4C6, H4C8, H4C9, H4C11, H4C12, H4C13, H4C14, H4C15, H4C16
Chain IDs:B, F
Chain Length:106
Number of Molecules:2
Biological Source:Homo sapiens

UniProt ID:P62805 Pfam ID:PF15511

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Histone H2A type 1-B/E
Gene (Uniprot):H2AC4, H2AC8
Chain IDs:C, G
Chain Length:133
Number of Molecules:2
Biological Source:Homo sapiens

UniProt ID:P04908 Pfam ID:PF00125, PF16211

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Histone H2B type 1-J
Gene (Uniprot):H2BC11
Chain IDs:D, H
Chain Length:128
Number of Molecules:2
Biological Source:Homo sapiens

UniProt ID:P06899 Pfam ID:PF00125

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Transcription activator BRG1
Gene (Uniprot):SMARCA4
Chain IDs:I
Chain Length:1647
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:P51532 Pfam ID:PF08880, PF07529, PF07533, PF00176, PF00271, PF14619, PF00439

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Actin-like protein 6A
Gene (Uniprot):ACTL6A
Chain IDs:J
Chain Length:429
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:O96019 Pfam ID:PF00022

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Actin, cytoplasmic 1, N-terminally processed
Gene (Uniprot):ACTB
Chain IDs:K
Chain Length:375
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:P60709 Pfam ID:PF00022

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:AT-rich interactive domain-containing protein 1A
Gene (Uniprot):ARID1A
Chain IDs:L
Chain Length:2285
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:O14497 Pfam ID:PF01388, PF12031

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Gene (Uniprot):SMARCB1
Chain IDs:M
Chain Length:385
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q12824 Pfam ID:PF21459, PF04855

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:SWI/SNF complex subunit SMARCC2
Gene (Uniprot):SMARCC2
Chain IDs:N, O
Chain Length:1214
Number of Molecules:2
Biological Source:Homo sapiens

UniProt ID:Q8TAQ2 Pfam ID:PF16496, PF04433, PF00249, PF16498, PF16495

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1
Gene (Uniprot):SMARCD1
Chain IDs:P
Chain Length:515
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q96GM5 Pfam ID:PF02201

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Zinc finger protein ubi-d4
Gene (Uniprot):DPF2
Chain IDs:Q (auth: R)
Chain Length:435
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q92785 Pfam ID:PF14051, PF00628

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Green fluorescent protein,POU domain, class 5, transcription factor 1
Gene (Uniprot):GFP, POU5F1
Chain IDs:R (auth: V)
Chain Length:645
Number of Molecules:1
Biological Source:Aequorea victoria, Homo sapiens

UniProt ID:P42212,Q01860 Pfam ID:PF00157, PF00046

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Transcription factor SOX-2
Gene (Uniprot):SOX2
Chain IDs:S (auth: W)
Chain Length:105
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:P48431 Pfam ID:PF00505

Polymer Type:polydeoxyribonucleotide
Molecule:DNA (147-MER)
Chain IDs:T (auth: X)
Chain Length:227
Number of Molecules:1
Biological Source:synthetic construct

Polymer Type:polydeoxyribonucleotide
Molecule:DNA (147-MER)
Chain IDs:U (auth: Y)
Chain Length:227
Number of Molecules:1
Biological Source:synthetic construct

Ligand Molecules

Primary Citation

Structure of BAF in complex with OCT4-SOX2-bound nucleosome - SHL+6 class 2

Vecchia, L, Weiss, J, Cavadini, S, Kempf, G, Kater, L, Pathare, G, Thoma, N.H.Show

To be published ? ? ? (?)

Primary Citation of related structures

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