9RN1 image
Deposition Date 2025-06-19
Release Date 2026-02-11
Last Version Date 2026-02-11
Entry Detail
PDB ID:
9RN1
Keywords:
GENE REGULATION
Title:
Structure of BAF-nucleosome complex with OCT4-SOX2 at SHL+6 in ADP-bound state, BAF47 bound to ATPase lobe 2
Biological Source:
Source Organism(s):
Homo sapiens (Taxon ID: 9606)
Aequorea victoria (Taxon ID: 6100)
synthetic construct (Taxon ID: 32630)
Expression System(s):
Escherichia coli, Homo sapiens, Trichoplusia ni
Method Details:
Experimental Method:
ELECTRON MICROSCOPY
Resolution:
5.90 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
9RN1 validation report
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Histone H3.1
Gene (Uniprot):H3C1, H3C2, H3C3, H3C4, H3C6, H3C7, H3C8, H3C10, H3C11, H3C12
Chain IDs:A, E
Chain Length:139
Number of Molecules:2
Biological Source:Homo sapiens
UniProt ID:P68431 Pfam ID:PF00125
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Histone H4
Gene (Uniprot):H4C1, H4C2, H4C3, H4C4, H4C5, H4C6, H4C8, H4C9, H4C11, H4C12, H4C13, H4C14, H4C15, H4C16
Chain IDs:B, F
Chain Length:106
Number of Molecules:2
Biological Source:Homo sapiens
UniProt ID:P62805 Pfam ID:PF15511
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Histone H2A type 1-B/E
Gene (Uniprot):H2AC4, H2AC8
Chain IDs:C, G
Chain Length:133
Number of Molecules:2
Biological Source:Homo sapiens
UniProt ID:P04908 Pfam ID:PF00125, PF16211
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Histone H2B type 1-J
Gene (Uniprot):H2BC11
Chain IDs:D, H
Chain Length:128
Number of Molecules:2
Biological Source:Homo sapiens
UniProt ID:P06899 Pfam ID:PF00125
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Transcription activator BRG1
Gene (Uniprot):SMARCA4
Chain IDs:I
Chain Length:1647
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P51532 Pfam ID:PF08880, PF07529, PF07533, PF00176, PF00271, PF14619, PF00439
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Actin-like protein 6A
Gene (Uniprot):ACTL6A
Chain IDs:J
Chain Length:429
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:O96019 Pfam ID:PF00022
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Actin, cytoplasmic 1, N-terminally processed
Gene (Uniprot):ACTB
Chain IDs:K
Chain Length:375
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P60709 Pfam ID:PF00022
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:AT-rich interactive domain-containing protein 1A
Gene (Uniprot):ARID1A
Chain IDs:L
Chain Length:2285
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:O14497 Pfam ID:PF01388, PF12031
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Gene (Uniprot):SMARCB1
Chain IDs:M
Chain Length:385
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:Q12824 Pfam ID:PF21459, PF04855
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:SWI/SNF complex subunit SMARCC2
Gene (Uniprot):SMARCC2
Chain IDs:N, O
Chain Length:1214
Number of Molecules:2
Biological Source:Homo sapiens
UniProt ID:Q8TAQ2 Pfam ID:PF16496, PF04433, PF00249, PF16498, PF16495
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1
Gene (Uniprot):SMARCD1
Chain IDs:P
Chain Length:515
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:Q96GM5 Pfam ID:PF02201
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1
Gene (Uniprot):SMARCE1
Chain IDs:Q
Chain Length:411
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:Q969G3 Pfam ID:PF00505
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Zinc finger protein ubi-d4
Gene (Uniprot):DPF2
Chain IDs:R
Chain Length:435
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:Q92785 Pfam ID:PF14051, PF00628
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Green fluorescent protein,POU domain, class 5, transcription factor 1
Gene (Uniprot):GFP, POU5F1
Chain IDs:S (auth: V)
Chain Length:645
Number of Molecules:1
Biological Source:Aequorea victoria, Homo sapiens
UniProt ID:P42212,Q01860 Pfam ID:PF00157, PF00046
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Transcription factor SOX-2
Gene (Uniprot):SOX2
Chain IDs:T (auth: W)
Chain Length:105
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P48431 Pfam ID:PF00505
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (148-MER)
Chain IDs:U (auth: X)
Chain Length:227
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (148-MER)
Chain IDs:V (auth: Y)
Chain Length:227
Number of Molecules:1
Biological Source:synthetic construct
Ligand Molecules
NA
Primary Citation
Structure of BAF-nucleosome complex with OCT4-SOX2 at SHL+6 in ADP-bound state, BAF47 bound to ATPase lobe 2
To Be Published ? ? ? (?)
Primary Citation of related structures
9RN1
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