9RKU image
Deposition Date 2025-06-14
Release Date 2025-12-10
Last Version Date 2026-01-21
Entry Detail
PDB ID:
9RKU
Keywords:
Title:
Agrobacterium phage 7-7-1 baseplate
Biological Source:
Source Organism(s):
Method Details:
Experimental Method:
Resolution:
3.44 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Putative tail biosynthetic protein
Gene (Uniprot):7-7-1_0003
Chain IDs:Y (auth: A1), Z (auth: A2), AA (auth: A3), BA (auth: A4), CA (auth: A5), DA (auth: A6)
Chain Length:398
Number of Molecules:6
Biological Source:Agrobacterium phage 7-7-1
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Putative structural protein
Gene (Uniprot):7-7-1_0006
Chain IDs:EA (auth: A7), FA (auth: A8), GA (auth: A9), HA (auth: A0), IA (auth: BA), JA (auth: BB)
Chain Length:178
Number of Molecules:6
Biological Source:Agrobacterium phage 7-7-1
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Baseplate protein
Gene (Uniprot):7-7-1_0005
Chain IDs:A (auth: Ac), B (auth: Ad), C (auth: Ae)
Chain Length:189
Number of Molecules:3
Biological Source:Agrobacterium phage 7-7-1
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Putative tail biosynthetic protein
Gene (Uniprot):7-7-1_0004
Chain IDs:D (auth: Af), E (auth: Ag), F (auth: Ah)
Chain Length:454
Number of Molecules:3
Biological Source:Agrobacterium phage 7-7-1
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Structural protein
Gene (Uniprot):7-7-1_0008
Chain IDs:G (auth: Ai), H (auth: Aj), I (auth: Ak), J (auth: Al), K (auth: Am), L (auth: An)
Chain Length:286
Number of Molecules:6
Biological Source:Agrobacterium phage 7-7-1
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Baseplate protein
Gene (Uniprot):7-7-1_0007
Chain IDs:M (auth: Ao), N (auth: Ap), O (auth: Aq), P (auth: Ar), Q (auth: As), R (auth: At), S (auth: Au), T (auth: Av), U (auth: Aw), V (auth: Ax), W (auth: Ay), X (auth: Az)
Chain Length:396
Number of Molecules:12
Biological Source:Agrobacterium phage 7-7-1
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Tail sheath protein
Gene (Uniprot):7-7-1_000126
Chain IDs:KA (auth: BN), MA (auth: BC), OA (auth: BD), QA (auth: BE), SA (auth: BF), UA (auth: BG), WA (auth: BH), YA (auth: BI), AB (auth: BJ), CB (auth: BK), EB (auth: BL), GB (auth: BM)
Chain Length:503
Number of Molecules:12
Biological Source:Agrobacterium phage 7-7-1
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Structural protein
Gene (Uniprot):7-7-1_000127
Chain IDs:LA (auth: BO), NA (auth: BP), PA (auth: BQ), RA (auth: BR), TA (auth: BS), VA (auth: BT), XA (auth: BU), ZA (auth: BV), BB (auth: BW), DB (auth: BX), FB (auth: BY), HB (auth: BZ)
Chain Length:136
Number of Molecules:12
Biological Source:Agrobacterium phage 7-7-1
Ligand Molecules
Primary Citation
Insights into the structure and initial host attachment of the flagellotropic bacteriophage 7-7-1.
Commun Biol 9 55 55 (2025)
PMID: 41353512 DOI: 10.1038/s42003-025-09319-7

Abstact

Understanding the structural and functional mechanisms of bacteriophage 7-7-1, the flagellotropic phage infecting Agrobacterium sp. H13-3, offers promising insights into phage-host interactions. Using single particle analysis (SPA) cryo-electron microscopy (cryo-EM), we determined the capsid, neck region, tail, and baseplate complex structures. Combined with cryo-electron tomography (cryo-ET) and machine learning methodologies, our findings indicate that phage 7-7-1 uses capsid fibers to establish initial contact with the host flagellum, followed by subsequent attachment to cell surface receptors. The study also demonstrated that capsid fibers are flexible and can interact with other phages and host flagella, suggesting a cooperative infection strategy. These results provide crucial structural insights and may open avenues for developing phage-based therapeutics against resistant bacterial pathogens.

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Chemical

Disease

Primary Citation of related structures
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