9RJK image
Deposition Date 2025-06-12
Release Date 2026-02-11
Last Version Date 2026-02-25
Entry Detail
PDB ID:
9RJK
Keywords:
Title:
Structure of Mycobacterium tuberculosis InhA in complex with pyridomycin derivative KV41a (compound 11)
Biological Source:
Source Organism(s):
Expression System(s):
Method Details:
Experimental Method:
Resolution:
1.66 Å
R-Value Free:
0.20
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Enoyl-[acyl-carrier-protein] reductase [NADH]
Gene (Uniprot):inhA
Chain IDs:A, B, C, D
Chain Length:272
Number of Molecules:4
Biological Source:Mycobacterium tuberculosis
Primary Citation
Optimizing the Antibiotic Potency and Metabolic Stability of Pyridomycin Using a Semisynthetic Approach.
J.Med.Chem. 69 2496 2508 (2026)
PMID: 41591406 DOI: 10.1021/acs.jmedchem.5c02409

Abstact

Pyridomycin is a natural product with potent activity against Mycobacterium tuberculosis (Mtb), acting through direct inhibition of the fatty acid synthesis enzyme InhA. As a direct inhibitor, pyridomycin maintains activity on Mtb strains resistant to the InhA targeting prodrugs isoniazid and ethionamide. Evaluation of the drug-like properties of pyridomycin, however, found it to have poor in vitro metabolic stability, thus limiting its drug development potential. To address this limitation, semisynthetic derivatives were generated by replacing the metabolically labile hydroxypicolinic acid group with alternative (hetero)aromatic moieties, identifying several derivatives with improved in vitro metabolic stability and with comparable or even enhanced antibacterial activity. Pharmacokinetic studies in mice, however, revealed that these gains did not reduce systemic clearance in vivo, and neither pyridomycin nor its derivatives were effective in a murine pulmonary tuberculosis model. Overall, semisynthesis yielded more potent, P450-stable analogs, but the improvements were insufficient to provide measurable in vivo efficacy.

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Primary Citation of related structures
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