ISDA: 9RDC

Deposition Date 2025-06-02

Release Date 2025-07-16

Last Version Date 2026-01-28

Entry Detail

PDB ID:

9RDC

Keywords:

PROTEIN BINDING

Title:

Crystal structure of Phytophthora infestans effector AVRcap1b in complex with the ENTH domain of Nicotiana benthamiana NbTOL9a protein

Biological Source:

Source Organism(s):

Phytophthora infestans (Taxon ID: 4787)
Nicotiana benthamiana (Taxon ID: 4100)

Expression System(s):

Escherichia coli

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

4.10 Å

R-Value Free:

0.28

R-Value Work:

0.24

R-Value Observed:

0.25

Space Group:

P 21 21 21

Download Validation Report

Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:RxLR effector protein PITG_16705
Gene (Uniprot):PITG_16705
Chain IDs:A, B
Chain Length:619
Number of Molecules:2
Biological Source:Phytophthora infestans

UniProt ID:D0NVF3 Pfam ID:PF22748

Polymer Type:polypeptide(L)
Molecule:Target of myb protein 1
Chain IDs:C, D
Chain Length:150
Number of Molecules:2
Biological Source:Nicotiana benthamiana

Ligand Molecules

Primary Citation

An effector from the potato late blight pathogen bridges ENTH-domain protein TOL9a to an activated helper NLR to suppress immunity

Madhuprakash, J, Toghani, A, Pai, H, Harvey, M, Bentham, A.R, Seager, B.A, Yuen, E.L.H, De la Concepcion, J.C, Lawson, D.M, Stevenson, C.E.M, Vergara-Cruces, A, Derevnina, L, Bozkurt, T.O, Banfield, M.J, Kamoun, S, Contreras, M.P.Show

Biorxiv ? ? ? (2025)

DOI: 10.1101/2025.07.06.663370

Primary Citation of related structures

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