9RBG image
Deposition Date 2025-05-26
Release Date 2025-08-13
Last Version Date 2025-10-29
Entry Detail
PDB ID:
9RBG
Keywords:
Title:
X-ray structure of decavanadate/lysozyme adduct obtained when the protein is treated with Cs2[V(V)2O4(mal)2]2H2O (structure A)
Biological Source:
Source Organism:
Gallus gallus (Taxon ID: 9031)
Method Details:
Experimental Method:
Resolution:
1.46 Å
R-Value Free:
0.31
R-Value Work:
0.23
Space Group:
P 43 21 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Lysozyme C
Gene (Uniprot):LYZ
Chain IDs:A (auth: AAA)
Chain Length:129
Number of Molecules:1
Biological Source:Gallus gallus
Primary Citation
Speciation and structural transformation of a V V -malate complex in the absence and in the presence of a protein: from a dinuclear species to decavanadate.
Inorg Chem Front 12 6503 6518 (2025)
PMID: 40757088 DOI: 10.1039/d5qi01384d

Abstact

A strategy for the development of new vanadium-based drugs is the preparation of complexes that target proteins and bear molecules involved in the cellular metabolism as ligands, like α-hydroxycarboxylic acids. Based on these premises, this study explores the solution behaviour of the dioxidovanadium(V) complex of malic acid, Cs2[VV 2O4(mal)2]·2H2O, and its interaction with the model protein lysozyme (HEWL) at room and at physiological temperature using 51V nuclear magnetic resonance (NMR), electrospray ionisation-mass spectrometry (ESI-MS) and X-ray crystallography. The results show the coexistence in aqueous solution of various molecular species containing two or ten VV centres. In solution these species are formed regardless of the presence of HEWL, while at 37 °C the formation of [VV 10O28]6- (V10) is precluded when the protein is present. Crystallographic data reveal that, when protein crystals are incubated with the V compound at room temperature (25 °C) and at pH 4.0, [VIVO]2+, [VV 2O5(mal)]2-, [VV 10O26]2- and [VV 10O28]6- are bound to the protein, while at 37 °C, under the same conditions, only [VIVO]2+ interacts with HEWL. [VV 10O28]6- can bind the protein both covalently (as [VV 10O26]2- ion) and non-covalently. Whereas the transformation of [VV 2O4(mal)2]2- to [VV 2O5(mal)]2- is expected on the basis of thermodynamic considerations, the formation of V10 and of the V10-HEWL adduct is not easily predictable. Docking calculations confirm the experimental results and highlight the role of protein-protein interaction in the stabilization of the revealed adduct. This study demonstrates that vanadium compounds can undergo transformation in solution, giving rise to species that interact with proteins through several binding modes and stabilization mechanisms.

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