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9RAJ image
Deposition Date 2025-05-21
Release Date 2026-01-14
Last Version Date 2026-01-14
Entry Detail
PDB ID:
9RAJ
Keywords:
Title:
Class A CTX-M-14 E166A mutant in complex with Dicloxacillin at room temperature
Biological Source:
Source Organism(s):
Method Details:
Experimental Method:
Resolution:
1.70 Å
R-Value Free:
0.22
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 32 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Beta-lactamase
Gene (Uniprot):KPHS_p301310
Mutagens:E166A
Chain IDs:A
Chain Length:291
Number of Molecules:1
Biological Source:Klebsiella pneumoniae
Ligand Molecules
Primary Citation
Binding mode of Isoxazolyl Penicillins to a Class-A beta-lactamase at ambient conditions.
Commun Chem 8 387 387 (2025)
PMID: 41326695 DOI: 10.1038/s42004-025-01801-x

Abstact

The predominant resistance mechanism observed in Gram-negative bacteria involves the production of β-lactamases, which catalyse the hydrolysis of β-lactam antibiotics, thereby rendering them ineffective. Although Isoxazolyl Penicillins have been available since the 1970s, there are currently no structures in complex with class-A β-lactamases available. Here we have analysed the structure of the clinically relevant β-lactamase CTX-M-14 from Klebsiella pneumoniae near physiological temperatures, via serial synchrotron crystallography. We demonstrate the acyl-enzyme intermediates of the catalytically impaired CTX-M-14 mutant E166A in complex with three Isoxazolyl-Penicillins: Oxacillin, Cloxacillin and Dicloxacillin. Structural comparisons of CTX-M-Penicillin complexes show that, while conserved active-site interactions are maintained, each Isoxazolyl-Penicillin adopts a distinct conformation. While the three derivatives differ only by one and two chlorine atoms, respectively, their conformational heterogeneity appears to be increased by chlorination of the phenyl ring.

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Primary Citation of related structures
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