9R8G image
Deposition Date 2025-05-16
Release Date 2026-01-14
Last Version Date 2026-01-21
Entry Detail
PDB ID:
9R8G
Keywords:
Title:
Pseudomonas putida Pore-Forming Toxin Tke5 in complex with its cognate Type VI adaptor protein Tap3
Biological Source:
Source Organism(s):
Expression System(s):
Method Details:
Experimental Method:
Resolution:
2.77 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Toxin VasX N-terminal region domain-containing protein
Gene (Uniprot):PP_2612
Chain IDs:A
Chain Length:996
Number of Molecules:1
Biological Source:Pseudomonas putida KT2440
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DUF4123 domain-containing protein
Gene (Uniprot):PP_2613
Chain IDs:B
Chain Length:318
Number of Molecules:1
Biological Source:Pseudomonas putida KT2440
Ligand Molecules
Primary Citation
Structural insights into the antibacterial function of the Pseudomonas putida effector Tke5.
Embo J. ? ? ? (2026)
PMID: 41526723 DOI: 10.1038/s44318-025-00689-6

Abstact

Pseudomonas putida is a plant-beneficial rhizobacterium that encodes multiple type-VI secretion systems (T6SS) to outcompete phytopathogens in the rhizosphere. Among its antibacterial effectors, Tke5 (a member of the BTH_I2691 protein family) is a potent pore-forming toxin that disrupts ion homeostasis without causing considerable membrane damage. Tke5 harbours an N-terminal MIX domain, which is required for T6SS-dependent secretion in other systems. Many MIX domain-containing effectors require T6SS adaptor proteins (Tap) for secretion, but their molecular mechanisms of adaptor-effector binding remain elusive. Here, we report the 2.8 Å cryo-EM structure of the Tap3-Tke5 complex of P. putida strain KT2440, providing structural and functional insights into how effector Tke5 is recruited by its cognate adaptor protein Tap3. Functional dissection shows that the α-helical region of Tke5 is sufficient to kill intoxicated bacteria, while its β-rich region likely contributes to target membrane specificity. These findings delineate a mechanism of BTH_I2691 proteins for Tap recruitment and toxin activity, contributing to our understanding of a widespread yet understudied toxin family.

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Primary Citation of related structures
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