9R87 image
Deposition Date 2025-05-15
Release Date 2025-07-02
Last Version Date 2025-10-15
Entry Detail
PDB ID:
9R87
Title:
Cap of the vault protein from Human Brain
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Method Details:
Experimental Method:
Resolution:
3.60 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Major vault protein
Gene (Uniprot):MVP
Chain IDs:A, B (auth: A1), C (auth: A2), D (auth: A3), E (auth: A4), F (auth: Ar), G (auth: As), H (auth: At), I (auth: Au), J (auth: Av), K (auth: Aw), L (auth: Ax), M (auth: Ay), N (auth: Az), O (auth: B), P (auth: C), Q (auth: D), R (auth: E), S (auth: F), T (auth: G), U (auth: H), V (auth: I), W (auth: J), X (auth: K), Y (auth: L), Z (auth: M), AA (auth: N), BA (auth: O), CA (auth: P), DA (auth: Q), EA (auth: R), FA (auth: S), GA (auth: T), HA (auth: U), IA (auth: V), JA (auth: W), KA (auth: X), LA (auth: Y), MA (auth: Z)
Chain Length:893
Number of Molecules:39
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Cryo-EM structure of the vault from human brain reveals symmetry mismatch at its caps.
Structure 33 1643 ? (2025)
PMID: 40803316 DOI: 10.1016/j.str.2025.07.014

Abstact

The vault protein is expressed in most eukaryotic cells, where it is assembled on polyribosomes into large hollow barrel-shaped complexes. Despite its widespread and abundant presence in cells, the biological function of the vault remains unclear. In this study, we describe the cryo-EM structure of vault particles that were imaged as a contamination of a preparation to extract tau filaments from brain tissue of an individual with progressive supranuclear palsy (PSP). We identify a mechanism of symmetry mismatch at the caps of the vault, from 39-fold to 13-fold symmetry, where two out of three monomers are sequentially excluded from the cap, resulting in a narrow, greasy pore at the tip of the vault. Our structure offers valuable insights for engineering carboxy-terminal modifications of the major vault protein (MVP) for potential therapeutic applications.

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Primary Citation of related structures