9R7E image
Deposition Date 2025-05-14
Release Date 2025-06-11
Last Version Date 2025-06-11
Entry Detail
PDB ID:
9R7E
Keywords:
Title:
Cryo-EM Structure of catalytic amyloids
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
5.00 Å
Aggregation State:
FILAMENT
Reconstruction Method:
HELICAL
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:PRO-LYS-PHE-LYS-PHE-LYS-PHE-LYS-PHE-LYS-PHE-LYS-PRO
Chain IDs:A, B, C, D, E, F, G, H (auth: L), I (auth: M), J (auth: N), K (auth: O), L (auth: P), M (auth: Q), N (auth: R), O (auth: S), P (auth: T)
Chain Length:13
Number of Molecules:16
Biological Source:Anaeramoeba ignava
Ligand Molecules
Primary Citation
Allosteric amyloid catalysis by coiled coil fibrils.
Nat Commun 16 5071 5071 (2025)
PMID: 40450012 DOI: 10.1038/s41467-025-60379-z

Abstact

Amyloid-mediated catalysis of key biological reactions has recently attracted significant interest as this phenomenon may portend new functions for physiological and synthetic amyloid proteins. Here, we report an allosteric mechanism of catalytic amyloids, mediated via an unconventional coiled-coil fibril organization, facilitating hydrolysis of β-lactam antibiotics. Specifically, the hydrolysis reaction was catalyzed by a fibrillar peptide comprising alternating lysine/phenylalanine β-sheet-forming sequence. Analysis of peptide variants, simulations, and cryogenic electron microscopy reveal that the β-lactam molecules attach electrostatically to the lysine sidechains on the fibrils' surfaces, generating a double-coiled fibril structure in which the anchored β-lactam molecules are nestled within twisted fibril strands. This organization facilitates the allosteric catalytic process in which hydrolytic β-lactam ring opening is induced via nucleophilic attacks by the lysine sidechains degradation. The allosteric catalytic activity of the phenylalanine/lysine amyloid fibrils highlights the functional versatility of amyloid fibrils and their potential applications in human health and environmental biotechnology.

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Primary Citation of related structures