9R79 image
Deposition Date 2025-05-14
Release Date 2025-11-05
Last Version Date 2025-11-05
Entry Detail
PDB ID:
9R79
Keywords:
Title:
Imine Reductase IR91 from Kribbella flavida with NADP+ and 5-methoxy-2-tetralone
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.80 Å
R-Value Free:
0.23
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:6-phosphogluconate dehydrogenase NAD-binding protein
Gene (Uniprot):Kfla_3935
Chain IDs:A, B
Chain Length:296
Number of Molecules:2
Biological Source:Kribbella flavida
Primary Citation
Structures of "Tyrosine-IRED" IR91 from Kribbella flavida in Complex with a Reductive Amination Substrate and Product.
Chembiochem 26 e202500450 e202500450 (2025)
PMID: 40727968 DOI: 10.1002/cbic.202500450

Abstact

Imine reductases with an (S)-preference for the reduction of the model substrate 2-methyl pyrroline typically contain tyrosine in the active site (Y-IREDs) instead of the aspartate present within (R)-selective enzymes (D-IREDs). As with D-IREDs, a subset of Y-IREDs is capable of enabling reductive amination reactions between some ketone and amine partners to give optically active amines with high optical purity. However, structures of Y-IREDs in complex with the substrates and products of the reductive amination have not been forthcoming. Herein, structures of the Y-IRED IR91 from Kribbella flavida in complex with 5-methoxy-2-tetralone, a synthetic precursor to the anti-Parkinson's treatment rotigotine, and also its reductive amination product with methylamine, 5-methoxy-(S)-2-(N-methylamino)-tetralin, are presented. The structures, in combination with mutation and kinetic studies, support a role for tryptophan residue W258 in the activity of the enzyme, possibly in binding of the ketone prior to reaction with methylamine.

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Primary Citation of related structures
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