9R6H image
Deposition Date 2025-05-12
Release Date 2026-01-14
Last Version Date 2026-03-11
Entry Detail
PDB ID:
9R6H
Keywords:
Title:
Crystal Structure of the M18BP1 SANTA domain as a EGFP-SANTA-nanobody fusion
Biological Source:
Source Organism(s):
Homo sapiens (Taxon ID: 9606)
Expression System(s):
Method Details:
Experimental Method:
Resolution:
2.42 Å
R-Value Free:
0.26
R-Value Work:
0.22
R-Value Observed:
0.23
Space Group:
C 1 2 1
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Genome polyprotein,Mis18-binding protein 1,Chains: A
Gene (Uniprot):MIS18BP1
Chain IDs:A, B
Chain Length:489
Number of Molecules:2
Biological Source:Homo sapiens
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
C12 A THR chromophore
Ligand Molecules
Primary Citation
M18BP1 valency and a distributed interaction footprint determine epigenetic centromere specification in humans.
Embo J. 45 1537 1572 (2026)
PMID: 41629527 DOI: 10.1038/s44318-026-00698-z

Abstact

The histone H3 variant CENP-A is considered an epigenetic landmark of centromeres. Its deposition reflects cell-cycle-regulated assembly of M18BP1, HJURP, and PLK1 on a divalent MIS18α/β scaffold. The localization determinants of this machinery remain poorly characterized. Here, we report that in human cells, artificial M18BP1 dimerization bypasses MIS18α/β, allowing the identification of at least four determinants of M18BP1 centromere localization. These include the SANTA domain, of which we report the first structure, as well as linear motifs in disordered neighboring regions, of which we characterize the interaction footprint on the CENP-A-associated 16-subunit constitutive centromere-associated network (CCAN). Our observations imply that M18BP1, after dimerization, is necessary and sufficient for centromere localization. Its cell-cycle-dependent dimerization on MIS18α/β promotes initial recognition of a multivalent centromeric assembly of old CENP-A and associated proteins, followed by cooption of PLK1 and HJURP and new CENP-A deposition. Our results shed new light on the determinants of centromere epigenetic inheritance in humans.

Legend

Protein

Chemical

Disease

Primary Citation of related structures
Feedback Form
Name
Email
Institute
Feedback