9R4I image
Deposition Date 2025-05-07
Release Date 2026-02-25
Last Version Date 2026-02-25
Entry Detail
PDB ID:
9R4I
Keywords:
GENE REGULATION
Title:
An auto inhibitory loop in the MiDAC histone deacetylase complex
Biological Source:
Source Organism(s):
Homo sapiens (Taxon ID: 9606)
Expression System(s):
Homo sapiens
Method Details:
Experimental Method:
ELECTRON MICROSCOPY
Resolution:
2.92 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
9R4I validation report
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Histone deacetylase 1
Gene (Uniprot):HDAC1
Chain IDs:A, D
Chain Length:482
Number of Molecules:2
Biological Source:Homo sapiens
UniProt ID:Q13547 Pfam ID:PF00850 EC:3.5.1.98
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Mitotic deacetylase-associated SANT domain protein
Gene (Uniprot):MIDEAS
Chain IDs:B, E
Chain Length:260
Number of Molecules:2
Biological Source:Homo sapiens
UniProt ID:Q6PJG2 Pfam ID:PF01448
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Deoxynucleotidyltransferase terminal-interacting protein 1
Gene (Uniprot):DNTTIP1
Chain IDs:C, F
Chain Length:329
Number of Molecules:2
Biological Source:Homo sapiens
UniProt ID:Q9H147 Pfam ID:PF18192, PF21229
Ligand Molecules
IHP
K
ZN
Primary Citation
A de novo missense variant in MIDEAS results in increased deacetylase activity of the MiDAC HDAC complex causing a neurodevelopmental syndrome.
Nat Commun 16 10472 10472 (2025)
PMID: 41290615 DOI: 10.1038/s41467-025-65472-x
Primary Citation of related structures
9R4I
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