ISDA

Deposition Date 2025-04-24

Release Date 2025-07-09

Last Version Date 2025-07-09

Entry Detail

PDB ID:

9R0Y

Keywords:

ANTIMICROBIAL PROTEIN

Title:

Crystal structure of NDM-1 with thiol compound 22b

Biological Source:

Source Organism:

Klebsiella pneumoniae (Taxon ID: 573)

Host Organism:

Escherichia coli BL21(DE3)

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

1.27 Å

R-Value Free:

0.19

R-Value Work:

0.16

R-Value Observed:

0.16

Space Group:

P 21 21 21

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Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Metallo-beta-lactamase type 2
Gene (Uniprot):blaNDM-1
Chain IDs:A, B
Chain Length:246
Number of Molecules:2
Biological Source:Klebsiella pneumoniae

UniProt ID:C7C422 Pfam ID:PF00753 EC:3.5.2.6

Ligand Molecules

A1JCK

SO4

Primary Citation

Repurposing of compound libraries yields new inhibitors of NDM-1 metallo-beta-lactamase with diverse zinc-binding moieties

Kavas, V, Hinchliffe, P, Zorman, M, Krajnc, A, Proj, M, Golob, M, Rambaher, M.H, Spencer, J, Gobec, S.Show

Eur J Med Chem Rep 15 100282 ? (2025)

DOI: 10.1016/j.ejmcr.2025.100282

Primary Citation of related structures