9R04 image
Deposition Date 2025-04-24
Release Date 2025-07-02
Last Version Date 2025-07-02
Entry Detail
PDB ID:
9R04
Keywords:
GENE REGULATION
Title:
p53 bound to the nucleosome at position SHL-5.7 (crosslinked sample)
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
synthetic construct (Taxon ID: 32630)
Host Organism:
Escherichia coli
Method Details:
Experimental Method:
ELECTRON MICROSCOPY
Resolution:
4.20 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
9R04 validation report
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Histone H3.1
Gene (Uniprot):H3C1, H3C2, H3C3, H3C4, H3C6, H3C7, H3C8, H3C10, H3C11, H3C12
Chain IDs:A, E
Chain Length:139
Number of Molecules:2
Biological Source:Homo sapiens
UniProt ID:P68431 Pfam ID:PF00125
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Histone H4
Gene (Uniprot):H4C1, H4C2, H4C3, H4C4, H4C5, H4C6, H4C8, H4C9, H4C11, H4C12, H4C13, H4C14, H4C15, H4C16
Chain IDs:B, F
Chain Length:106
Number of Molecules:2
Biological Source:Homo sapiens
UniProt ID:P62805 Pfam ID:PF15511
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Histone H2A type 1-B/E
Gene (Uniprot):H2AC4, H2AC8
Chain IDs:C, G
Chain Length:133
Number of Molecules:2
Biological Source:Homo sapiens
UniProt ID:P04908 Pfam ID:PF00125, PF16211
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Histone H2B type 1-J
Gene (Uniprot):H2BC11
Chain IDs:D, H
Chain Length:128
Number of Molecules:2
Biological Source:Homo sapiens
UniProt ID:P06899 Pfam ID:PF00125
Polymer Type:polydeoxyribonucleotide
Molecule:DNA-for
Chain IDs:I
Chain Length:153
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:DNA-rev
Chain IDs:J
Chain Length:153
Number of Molecules:1
Biological Source:synthetic construct
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cellular tumor antigen p53
Gene (Uniprot):TP53
Chain IDs:K, L, M, N
Chain Length:417
Number of Molecules:4
Biological Source:Homo sapiens
UniProt ID:P04637 Pfam ID:PF08563, PF18521, PF00870, PF07710
Ligand Molecules
NA
Primary Citation
p53 bound to the nucleosome at position SHL-5.7 (crosslinked sample)
To Be Published ? ? ? (?)
Primary Citation of related structures
9R04