ISDA

Entry Detail

PDB ID:

9QVN

EMDB ID:

EMD-53400

Keywords:

STRUCTURAL PROTEIN

Title:

Cryo-EM reconstruction of the NEDD1 anchor protein bound to the gamma-tubulin ring complex

Biological Source:

Source Organism:

Homo sapiens

Host Organism:

Trichoplusia ni

PDB Version:

Deposition Date:

2025-04-11

Release Date:

2025-05-21

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

4.70 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Description:Gamma-tubulin complex component 3
Chain IDs:A (auth: D), B (auth: F), C (auth: H), Y (auth: r), Z (auth: s), AA (auth: t), BA (auth: u), CA (auth: v), DA (auth: B), FA (auth: N)
Chain Length:457
Number of Molecules:10
Biological Source:Homo sapiens

UniProt ID:Q96CW5 Pfam ID:PF17681, PF04130

Protein Blast

Polymer Type:polypeptide(L)
Description:Isoform 3 of Gamma-tubulin complex component 2
Chain IDs:JA (auth: G), LA (auth: M), MA (auth: C), OA (auth: A), PA (auth: E)
Chain Length:457
Number of Molecules:5
Biological Source:Homo sapiens

UniProt ID:Q9BSJ2 Pfam ID:PF17681, PF04130

Protein Blast

Polymer Type:polypeptide(L)
Description:Gamma-tubulin complex component 5
Chain IDs:NA (auth: J)
Chain Length:457
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q96RT8 Pfam ID:PF17681, PF04130

Protein Blast

Polymer Type:polypeptide(L)
Description:Gamma-tubulin complex component 4
Chain IDs:EA (auth: K), QA (auth: I)
Chain Length:667
Number of Molecules:2
Biological Source:Homo sapiens

UniProt ID:Q9UGJ1 Pfam ID:PF17681, PF04130

Protein Blast

Polymer Type:polypeptide(L)
Description:TUBGCP6 protein
Chain IDs:KA (auth: L)
Chain Length:1811
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:B2RWN4 Pfam ID:PF19340, PF17681, PF04130

Protein Blast

Polymer Type:polypeptide(L)
Description:Mitotic-spindle organizing protein 1
Chain IDs:D (auth: P), E (auth: R), F (auth: S), G (auth: T), H (auth: U), RA (auth: O), SA (auth: Q)
Chain Length:82
Number of Molecules:7
Biological Source:Homo sapiens

UniProt ID:Q08AG7 Pfam ID:PF12554

Protein Blast

Polymer Type:polypeptide(L)
Description:Protein NEDD1
Chain IDs:I (auth: W), J (auth: X), HA (auth: V), IA (auth: Y)
Chain Length:907
Number of Molecules:4
Biological Source:Homo sapiens

UniProt ID:Q8NHV4 Pfam ID:PF00400

Protein Blast

Polymer Type:polypeptide(L)
Description:Actin, cytoplasmic 1, N-terminally processed
Chain IDs:K (auth: Z)
Chain Length:375
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:P60709 Pfam ID:PF00022

Protein Blast

Polymer Type:polypeptide(L)
Description:Tubulin gamma-1 chain
Chain IDs:L (auth: a), M (auth: b), N (auth: c), O (auth: e), P (auth: f), Q (auth: g), R (auth: h), S (auth: i), T (auth: j), U (auth: k), V (auth: l), W (auth: m), X (auth: n), GA (auth: d)
Chain Length:457
Number of Molecules:14
Biological Source:Homo sapiens

UniProt ID:P23258 Pfam ID:PF00091, PF03953

Ligand Molecules

Primary Citation

Structure of the microtubule anchoring factor NEDD1 bound to the gamma-tubulin ring complex.

Munoz-Hernandez, H, Xu, Y, Zhang, D, Xue, A, Aher, A, Camardiel, A.P, Walker, E, Marxer, F, Kapoor, T.M, Wieczorek, M, Munoz-Hernandez, H, Xu, Y, Zhang, D, Xue, A, Aher, A, Camardiel, A.P, Walker, E, Marxer, F, Kapoor, T.M, Wieczorek, M.Show

Journal of Cell Biology ? ? ? (2025)

DOI: 10.1083/jcb.202410206

Primary Citation of related structures