9QU1 image
Deposition Date 2025-04-09
Release Date 2025-07-16
Last Version Date 2025-07-16
Entry Detail
PDB ID:
9QU1
Title:
Crystal structure of the human RalGAPA2 N-terminal domain with human kappaB-Ras1
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Method Details:
Experimental Method:
Resolution:
2.72 Å
R-Value Free:
0.25
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Ral GTPase-activating protein subunit alpha-2
Gene (Uniprot):RALGAPA2
Chain IDs:A, B
Chain Length:254
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:NF-kappa-B inhibitor-interacting Ras-like protein 1
Gene (Uniprot):NKIRAS1
Chain IDs:C, D (auth: F)
Chain Length:179
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation
The GTPase kappa B-Ras is an essential subunit of the RalGAP tumor suppressor complex.
J.Biol.Chem. ? 110460 110460 (2025)
PMID: 40619001 DOI: 10.1016/j.jbc.2025.110460

Abstact

κB-Ras1 and κB-Ras2 are small GTPases with non-canonical features that act as tumor suppressors downstream of Ras. Via interaction with the RalGAP (GTPase activating protein) complex, they limit activity of Ral GTPases and restrict anchorage-independent proliferation. We here present the crystal structure of κB-Ras1 in complex with the N-terminal domain of RGα2. The structure suggests a mechanism of intrinsic GTP hydrolysis of κB-Ras1 that relies on a scaffolding function of the GTPase rather than on catalytic residues, which we confirm by mutational analysis. The interaction with RGα2 is nucleotide-independent and does not involve κB-Ras1 switch regions, which establishes κB-Ras proteins as a constitutive third subunit of RalGAP complexes. Functional studies demonstrate that κB-Ras proteins are not required for RalGAP catalytic activity in vitro, but for functionality in vivo. We propose that κB-Ras may thus act as regulator of RalGAP localization and thereby control the Ras/Ral signaling pathway.

Legend

Protein

Chemical

Disease

Primary Citation of related structures