9QTO image
Deposition Date 2025-04-09
Release Date 2026-02-18
Last Version Date 2026-02-18
Entry Detail
PDB ID:
9QTO
Title:
Human alpha7 nicotinic receptor in complex with the E6 nanobody
Biological Source:
Source Organism(s):
Homo sapiens (Taxon ID: 9606)
Vicugna pacos (Taxon ID: 30538)
Expression System(s):
Method Details:
Experimental Method:
Resolution:
2.16 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Neuronal acetylcholine receptor subunit alpha-7,CHRNA7 (exons 5-10) and FAM7A (exons A-E) fusion
Chain IDs:A, B, C, D, E
Chain Length:375
Number of Molecules:5
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Nanobody E6
Chain IDs:F, G, H, I, J
Chain Length:159
Number of Molecules:5
Biological Source:Vicugna pacos
Primary Citation
Discovery and mechanism of negative allosteric modulation of the alpha 7 nicotinic acetylcholine receptor by nanobodies.
Proc.Natl.Acad.Sci.USA 123 e2514734123 e2514734123 (2026)
PMID: 41576092 DOI: 10.1073/pnas.2514734123

Abstact

α7 nicotinic receptors are neurotransmitter-gated ion channels involved in neurological and inflammatory diseases. Ligands acting on its neurotransmitter binding site and on the channel domain of α7 have been extensively developed, yielding a wide range of orthosteric effectors and allosteric positive modulators. Here, we present the functional and structural characterization of two camelid antibody fragments, or nanobodies, F1 and E6, that inhibit α7 activity by acting as negative allosteric modulators, an underrepresented class of ligands. Cryo-EM structures of the nanobodies in complex with α7 show that both nanobodies form a pentameric bundle at the apex of the receptor, each nanobody interacting through a conserved set of residues at α7 subunit interfaces. Electrophysiological experiments suggest that E6 inhibits the activity of α7 by stabilizing its resting conformation, and that internanobodies interactions are key to its activity. Those two nanobodies expand the toolbox for human α7 modulation, opening new possibilities for its pharmacological control with far reaching potentialities in clinics.

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Primary Citation of related structures
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