9QT5 image
Deposition Date 2025-04-07
Release Date 2025-05-14
Last Version Date 2025-05-14
Entry Detail
PDB ID:
9QT5
Keywords:
RIBOSOME
Title:
Structure of the 50S ribosomal subunit from the antibiotic-producing bacterium Streptomyces fradiae
Biological Source:
Source Organism:
Streptomyces fradiae ATCC 10745 = DSM 40063 (Taxon ID: 1319510)
Method Details:
Experimental Method:
ELECTRON MICROSCOPY
Resolution:
3.13 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
9QT5 validation report
Macromolecular Entities
Polymer Type:polyribonucleotide
Molecule:23S rRNA
Chain IDs:DA (auth: 1)
Chain Length:3119
Number of Molecules:1
Biological Source:Streptomyces fradiae ATCC 10745 = DSM 40063
Polymer Type:polyribonucleotide
Molecule:5S rRNA
Chain IDs:B (auth: 2)
Chain Length:117
Number of Molecules:1
Biological Source:Streptomyces fradiae ATCC 10745 = DSM 40063
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein bL32
Gene (Uniprot):rpmF
Chain IDs:X (auth: 3)
Chain Length:57
Number of Molecules:1
Biological Source:Streptomyces fradiae ATCC 10745 = DSM 40063
UniProt ID:A0A1Y2NTQ5 Pfam ID:PF01783
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein bL33
Gene (Uniprot):rpmG2_1
Chain IDs:Y (auth: 4)
Chain Length:54
Number of Molecules:1
Biological Source:Streptomyces fradiae ATCC 10745 = DSM 40063
UniProt ID:A0A1Y2P044 Pfam ID:PF00471
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein bL34
Gene (Uniprot):rpmH
Chain IDs:Z (auth: 5)
Chain Length:45
Number of Molecules:1
Biological Source:Streptomyces fradiae ATCC 10745 = DSM 40063
UniProt ID:A0A1Y2P0X6 Pfam ID:PF00468
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein bL35
Gene (Uniprot):rpmI
Chain IDs:AA (auth: 6)
Chain Length:64
Number of Molecules:1
Biological Source:Streptomyces fradiae ATCC 10745 = DSM 40063
UniProt ID:A0A1Y2NZ92 Pfam ID:PF01632
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein bL36
Gene (Uniprot):rpmJ
Chain IDs:BA (auth: 7)
Chain Length:37
Number of Molecules:1
Biological Source:Streptomyces fradiae ATCC 10745 = DSM 40063
UniProt ID:A0A1Y2NMD2 Pfam ID:PF00444
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein uL2
Gene (Uniprot):rplB
Chain IDs:C (auth: B)
Chain Length:278
Number of Molecules:1
Biological Source:Streptomyces fradiae ATCC 10745 = DSM 40063
UniProt ID:A0A1Y2NM84 Pfam ID:PF00181, PF03947
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein uL3
Gene (Uniprot):rplC
Chain IDs:D (auth: C)
Chain Length:214
Number of Molecules:1
Biological Source:Streptomyces fradiae ATCC 10745 = DSM 40063
UniProt ID:A0A1Y2NM83 Pfam ID:PF00297
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein uL4
Gene (Uniprot):rplD
Chain IDs:E (auth: D)
Chain Length:216
Number of Molecules:1
Biological Source:Streptomyces fradiae ATCC 10745 = DSM 40063
UniProt ID:A0A1Y2NM93 Pfam ID:PF00573
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein uL5
Gene (Uniprot):rplE
Chain IDs:F (auth: E)
Chain Length:185
Number of Molecules:1
Biological Source:Streptomyces fradiae ATCC 10745 = DSM 40063
UniProt ID:A0A1Y2NM88 Pfam ID:PF00281, PF00673
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein uL6
Gene (Uniprot):rplF
Chain IDs:G (auth: F)
Chain Length:179
Number of Molecules:1
Biological Source:Streptomyces fradiae ATCC 10745 = DSM 40063
UniProt ID:A0A1Y2NNJ7 Pfam ID:PF00347
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein bL9
Gene (Uniprot):rplI
Chain IDs:H (auth: G)
Chain Length:148
Number of Molecules:1
Biological Source:Streptomyces fradiae ATCC 10745 = DSM 40063
UniProt ID:A0A1Y2P0X7 Pfam ID:PF01281, PF03948
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein uL13
Gene (Uniprot):rplM
Chain IDs:I (auth: J)
Chain Length:147
Number of Molecules:1
Biological Source:Streptomyces fradiae ATCC 10745 = DSM 40063
UniProt ID:A0A1Y2NMA9 Pfam ID:PF00572
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein uL14
Gene (Uniprot):rplN
Chain IDs:J (auth: K)
Chain Length:122
Number of Molecules:1
Biological Source:Streptomyces fradiae ATCC 10745 = DSM 40063
UniProt ID:A0A1Y2NM92 Pfam ID:PF00238
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein uL15
Gene (Uniprot):rplO
Chain IDs:L
Chain Length:151
Number of Molecules:1
Biological Source:Streptomyces fradiae ATCC 10745 = DSM 40063
UniProt ID:A0A1Y2NN24 Pfam ID:PF00828
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein uL16
Gene (Uniprot):rplP
Chain IDs:A (auth: M)
Chain Length:139
Number of Molecules:1
Biological Source:Streptomyces fradiae ATCC 10745 = DSM 40063
UniProt ID:A0A1Y2NNE1 Pfam ID:PF00252
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein bL17
Gene (Uniprot):rplQ
Chain IDs:CA (auth: N)
Chain Length:164
Number of Molecules:1
Biological Source:Streptomyces fradiae ATCC 10745 = DSM 40063
UniProt ID:A0A1Y2NMK7 Pfam ID:PF01196
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein uL18
Gene (Uniprot):rplR
Chain IDs:K (auth: O)
Chain Length:127
Number of Molecules:1
Biological Source:Streptomyces fradiae ATCC 10745 = DSM 40063
UniProt ID:A0A1Y2NNX4 Pfam ID:PF00861
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein bL19
Gene (Uniprot):rplS
Chain IDs:M (auth: P)
Chain Length:116
Number of Molecules:1
Biological Source:Streptomyces fradiae ATCC 10745 = DSM 40063
UniProt ID:A0A1Y2NTT8 Pfam ID:PF01245
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein bL20
Gene (Uniprot):rplT
Chain IDs:N (auth: Q)
Chain Length:128
Number of Molecules:1
Biological Source:Streptomyces fradiae ATCC 10745 = DSM 40063
UniProt ID:A0A1Y2NZD1 Pfam ID:PF00453
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein bL21
Gene (Uniprot):rplU
Chain IDs:O (auth: R)
Chain Length:106
Number of Molecules:1
Biological Source:Streptomyces fradiae ATCC 10745 = DSM 40063
UniProt ID:A0A1Y2NZA8 Pfam ID:PF00829
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein uL22
Gene (Uniprot):rplV
Chain IDs:P (auth: S)
Chain Length:115
Number of Molecules:1
Biological Source:Streptomyces fradiae ATCC 10745 = DSM 40063
UniProt ID:A0A1Y2NNI7 Pfam ID:PF00237
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein uL23
Gene (Uniprot):rplW
Chain IDs:Q (auth: T)
Chain Length:107
Number of Molecules:1
Biological Source:Streptomyces fradiae ATCC 10745 = DSM 40063
UniProt ID:A0A1Y2NM78 Pfam ID:PF00276
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein uL24
Gene (Uniprot):rplX
Chain IDs:R (auth: U)
Chain Length:107
Number of Molecules:1
Biological Source:Streptomyces fradiae ATCC 10745 = DSM 40063
UniProt ID:A0A1Y2NM97 Pfam ID:PF00467, PF17136
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein bL25
Gene (Uniprot):rplY
Chain IDs:S (auth: V)
Chain Length:195
Number of Molecules:1
Biological Source:Streptomyces fradiae ATCC 10745 = DSM 40063
UniProt ID:A0A1Y2P3K7 Pfam ID:PF01386, PF14693
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein bL27
Gene (Uniprot):rpmA
Chain IDs:T (auth: W)
Chain Length:84
Number of Molecules:1
Biological Source:Streptomyces fradiae ATCC 10745 = DSM 40063
UniProt ID:A0A1Y2NZJ9 Pfam ID:PF01016
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein bL28
Gene (Uniprot):rpmB_1
Chain IDs:U (auth: X)
Chain Length:61
Number of Molecules:1
Biological Source:Streptomyces fradiae ATCC 10745 = DSM 40063
UniProt ID:A0A1Y2NV37 Pfam ID:PF00830
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein uL29
Gene (Uniprot):rpmC
Chain IDs:V (auth: Y)
Chain Length:74
Number of Molecules:1
Biological Source:Streptomyces fradiae ATCC 10745 = DSM 40063
UniProt ID:A0A1Y2NMI9 Pfam ID:PF00831
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein uL30
Gene (Uniprot):rpmD
Chain IDs:W (auth: Z)
Chain Length:60
Number of Molecules:1
Biological Source:Streptomyces fradiae ATCC 10745 = DSM 40063
UniProt ID:A0A1Y2NMJ7 Pfam ID:PF00327
Ligand Molecules
NA
Primary Citation
Evolution of drug-binding sites in bacterial ribosomes
To Be Published ? ? ? (?)
Primary Citation of related structures
9QT5