9QPB image
Deposition Date 2025-03-26
Release Date 2026-02-11
Last Version Date 2026-02-11
Entry Detail
PDB ID:
9QPB
Keywords:
Title:
APH(2'')-IVa with an inhibitor
Biological Source:
Source Organism(s):
Expression System(s):
Method Details:
Experimental Method:
Resolution:
1.86 Å
R-Value Free:
0.25
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:APH(2'')-Id
Gene (Uniprot):aph(2'')-Id
Chain IDs:A (auth: B), B (auth: A)
Chain Length:321
Number of Molecules:2
Biological Source:Enterococcus casseliflavus
Primary Citation
Fragment-based drug design of a bacterial kinase inhibitor capable of increasing the antibiotic sensitivity of clinical isolates.
Commun Chem 8 417 417 (2025)
PMID: 41310159 DOI: 10.1038/s42004-025-01795-6

Abstact

According to the World Health Organization (WHO), antimicrobial resistance is a serious global health issue. Overcoming antibiotic resistance involves several strategies, including the inhibition of resistance mechanisms. Among the various resistance mechanisms, aminoglycoside phosphotransferases (APHs) catalyze the transfer of the γ-phosphate from a nucleotide donor to various aminoglycosides, leading to their inactivation. In this work, using a fragment-based drug design (FBDD) approach, we have identified and characterized a promising APH inhibitor capable of increasing the sensitivity of Pseudomonas aeruginosa and Staphylococcus aureus resistant to aminoglycosides. It is therefore a good candidate for the future development of APH inhibitors to be prescribed in combination with aminoglycosides. This molecule is a competitive inhibitor of adenosine 5'-triphosphate (ATP), the phosphate donor of APHs. Further studies are required to optimize this molecule to improve its specificity for APHs and its bioavailability in bacteria.

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Primary Citation of related structures
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